View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_high_5 (Length: 443)
Name: NF7970_high_5
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 432
Target Start/End: Original strand, 28681414 - 28681832
Alignment:
| Q |
15 |
ctaatttcttttcactaccaaacatagtgtcttttcactatcaaacatggtattgg--tgtcttgtgcgtttcgatacatagataaagaaaaggagaaaa |
112 |
Q |
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| T |
28681414 |
ctaatttcttttcactaccaaacatagtgtcttttcactatcaaacatggtgttggggtgtcttgtgcgtttagagacatagataaagaaaaggagaaaa |
28681513 |
T |
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| Q |
113 |
aatgataaatttaattgataatgcaatttactaaaaattagtaactattaaattattacttcnnnnnnnnnnnnnnnnnnnnnnctctaaattactagga |
212 |
Q |
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| T |
28681514 |
aatgataaatttaattgataatgcaatttactaaaaattagtaagtattaaattattacttcaaaaaaaaagtataaaataaa-ctctaaattactagga |
28681612 |
T |
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| Q |
213 |
tattttctcctataaaccgaagattattaagtataaaaaataatgaatgcaaatttacaaacaagtgaaaccctagtggtaattaattttagagtcaatc |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
28681613 |
tattttctcctataaaccaaagattattaagtataaaaaataatgaatgcaaatttacaaacaagtgaaaccctagtggtaattgattttagagtcactc |
28681712 |
T |
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| Q |
313 |
aagggaatccaaatcacatgtctccacacacatattctcctaatgctaattaatttttgagaaatgttaacgagtgtctcaaagacactctttaggaatt |
412 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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| T |
28681713 |
aagggaatccaaatcacatgtctcaacacacatattctgctaatactaattaattttagagaaatgctaacgagtgtctcaaagacactctttagagatt |
28681812 |
T |
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| Q |
413 |
gtgagagcatctacgttcat |
432 |
Q |
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| T |
28681813 |
gtgagagcacctacattcat |
28681832 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 29036137 - 29036093
Alignment:
| Q |
362 |
ttaatttttgagaaatgttaacgagtgtctcaaagacactcttta |
406 |
Q |
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| T |
29036137 |
ttaatttttgagaaatgctaacgaatgttccaaagacactcttta |
29036093 |
T |
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