View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_high_6 (Length: 431)
Name: NF7970_high_6
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 26526579 - 26526201
Alignment:
| Q |
1 |
aatagaatataaattagtgcacattaatactaattacatacacagtgaggaacacattcgacccttgttatgtttaatcactttttaatgctagcaaatc |
100 |
Q |
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| T |
26526579 |
aatagaatataaattagtgcacattaatactaattacgtacacagtgaggaacacattcgaaccttgttatgtttaatcacttcttaatgctagcaaatc |
26526480 |
T |
|
| Q |
101 |
attttttgatagcctcatgaggaagaacaacattagatcatgtctgtcttgtattgaacacaccaccgtaacagtacaaaactgtataagaacattaaca |
200 |
Q |
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| T |
26526479 |
attttttgatagcctcatgaggaagaacaacattagatcatgtctgtcttgtattgaacacaccaccgtaacagtacaaaactgtataagaacattaaca |
26526380 |
T |
|
| Q |
201 |
gataataattccatgatttcgctacgtcaagtccaatttagttaccttgatttcgnnnnnnnnnnnnnnnngtcgaaagcttccggcatttatgcaggta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26526379 |
gataataattccatgatttcgctacgtcaagtccaattaagttaccttgatttcgttttttatagttttttgtcgaaagcttccggcatttatgcaggta |
26526280 |
T |
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| Q |
301 |
ataattccatgatctattcagcatttgaatagaatagctagatcaaaatgagacaaagcataaaagaattgtaacatga |
379 |
Q |
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| T |
26526279 |
ataattccatgatctattcagcttttgaatagaatagctagatcaaaatgagacaaagcataaaagaattgtaacatga |
26526201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 26518366 - 26518330
Alignment:
| Q |
376 |
atgaaagctaagttgagtttgccatggtctacatacc |
412 |
Q |
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| T |
26518366 |
atgaaagctaagttgagtttgccatggtctacatacc |
26518330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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