View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7970_low_10 (Length: 349)

Name: NF7970_low_10
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7970_low_10
NF7970_low_10
[»] chr6 (8 HSPs)
chr6 (20-335)||(2429171-2429487)
chr6 (31-225)||(2445700-2445894)
chr6 (30-225)||(2679774-2679969)
chr6 (20-225)||(2603040-2603245)
chr6 (110-207)||(2615433-2615530)
chr6 (30-225)||(2647328-2647526)
chr6 (20-225)||(2575024-2575229)
chr6 (164-249)||(2425823-2425910)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 2429487 - 2429171
Alignment:
Q  20 ccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagcca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  2429487 ccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccaaaaaaaccaaaagcca 2429388  T
Q  120 tgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccact 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2429387 tgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccacc 2429288  T
Q  220 acccatagtggcccccttttcttttctaatgatatgatatgattttctagtcactatatatttgtgctttgagagatgtgaggatttatagggaaagata 319  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  2429287 acccatagtggcccccttttctattctaatgatatgatatgattttctagtcactatatatttgtgctttgagagttgtggggatttatagggaaagata 2429188  T
Q  320 gagt-ggggagttgaga 335  Q
    |||| ||||||||||||    
T  2429187 gagtgggggagttgaga 2429171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 2445894 - 2445700
Alignment:
Q  31 accaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaaccaa 130  Q
    ||||| |||||||||||||||||||||||| | |||||| | ||||| ||| ||||||||||||||||||||       |||||| |||| ||||||||     
T  2445894 accaatagagttcataattttgcttgtgattagcaacaccatagggatcattatgccatcaccaatagccccaaatgaaccaaaaaccattaaaaaccag 2445795  T
Q  131 tcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccactacccat 225  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||    
T  2445794 tctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacatttttctgctcaccaccacccat 2445700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 2679774 - 2679969
Alignment:
Q  30 taccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaacca 129  Q
    |||||| ||||||||||||| |||||||||||||||| || |||||   ||| |  ||||||||||| || ||       ||||||||||||||||| ||    
T  2679774 taccaatagagttcataattctgcttgtgataaacaaaaccaaaggagtcattagtccatcaccaatggcaccaatcaaaccaaaagccatgaaaaaaca 2679873  T
Q  130 atcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccactacccat 225  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  2679874 atcaagaacatcagcatgcatgaaaatggacctaaaagaaccatttttctttttcttaacattaatggaaacatttttctgatcaccaccacccat 2679969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 2603040 - 2603245
Alignment:
Q  20 ccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagcca 119  Q
    |||||||||| ||||| ||||||||||| | ||| ||  ||||||||||  ||||| ||    |||||||||||||| |  ||       |||||| |||    
T  2603040 ccagaagcaccaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaaaccaaaaacca 2603139  T
Q  120 tgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccact 219  Q
    ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  2603140 tgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttaacattaatggaaacatttttctgatcaccacc 2603239  T
Q  220 acccat 225  Q
    ||||||    
T  2603240 acccat 2603245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 2615530 - 2615433
Alignment:
Q  110 ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacattttt 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2615530 ccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttcttatcattaatggaaacattttt 2615433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 2647328 - 2647526
Alignment:
Q  30 taccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaacca 129  Q
    |||||| ||||||||||| |||||||| ||||||||| |  |||||   ||| || ||||||||||| || ||       ||||||||||| || || ||    
T  2647328 taccaatagagttcataagtttgcttgagataaacaaaagcaaaggagtcattattccatcaccaatggctccaaacaaaccaaaagccattaagaaaca 2647427  T
Q  130 atcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttcttt---ttcttatcattaatggaaacatttttctgatcaccactacccat 225  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||| ||||||||||||||||||||||||||| || ||||||    
T  2647428 atcaagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctgatcactaccacccat 2647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 2575024 - 2575229
Alignment:
Q  20 ccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagcca 119  Q
    |||||||||||||||| ||||||||||| | ||| ||  ||||||||||  ||||| ||    |||||||||||||| |  ||       |||||| |||    
T  2575024 ccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaaaccaaaaacca 2575123  T
Q  120 tgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccact 219  Q
    ||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | |  |||| |||||||||||||||||||||     
T  2575124 tgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttcttaacaatgtaaacatttttctgatcaccacc 2575223  T
Q  220 acccat 225  Q
    ||||||    
T  2575224 acccat 2575229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 2425910 - 2425823
Alignment:
Q  164 aaagaaccatttttctttttcttat---cattaatggaaacatttttctgatcaccactacccatagtgg-cccccttttcttttctaat 249  Q
    ||||||||||||||||||||||| |   ||||||||||||||||||||| |||| |  ||  ||| |||| |||||||||||||||||||    
T  2425910 aaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatcagccata--catggtggccccccttttcttttctaat 2425823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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