View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_low_11 (Length: 293)
Name: NF7970_low_11
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_low_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 31105930 - 31106222
Alignment:
| Q |
1 |
ttgttataaatatagagttatattgagttttcttcgccccgaacatccctagtctattgattgtacttggggcttgggtagttgtgtgtcttgagagagt |
100 |
Q |
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| T |
31105930 |
ttgttataaatatagagttatattgagttttcttcaccccgaacatccctagtctactggttgtacttggggcttgggtagttgtgtgtcttgagagagt |
31106029 |
T |
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| Q |
101 |
ttacaacttttccgtgcaaaatcaaattcattttatctaactaacatttgtgaaatagaaaatgtcatttgcacctaactaggctgtgttaaaggatata |
200 |
Q |
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| T |
31106030 |
ttacaacttttccgtgcaaaatcaaactcattttatctaactaacatttgtgaaatagaaaatgtcatttgcatctaactaggctgtgttaaaggatata |
31106129 |
T |
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| Q |
201 |
ataatgtgatctaaaaaatgtcattctatccaaaaatttcttttatcattaaaatgaacagcatttcattttgacatataatgttgatattga |
293 |
Q |
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| T |
31106130 |
atgatgtgatctaaaaaatgtaattctatccaaaaatttcttttatcattaaaatgaacagcatttcattttgacatataatgttgatattga |
31106222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 31107828 - 31107895
Alignment:
| Q |
132 |
tttatctaactaacatttgtgaaatagaaaatgtcatttgcacctaactaggctgtgttaaaggatataata |
203 |
Q |
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| T |
31107828 |
tttatctaactaacatttgtgcaatagaaaatgtcatctgcac----agaggctgtgttaaaggatataata |
31107895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 3511763 - 3511677
Alignment:
| Q |
14 |
agagttatattgagttttcttcgccccgaacatccctagtctattgattgtacttggggcttgggtagttgtgtgtcttgagagagttt |
102 |
Q |
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| T |
3511763 |
agagttatattgagttttcatcaccac-aacaactctagtcttttgggtgta-ttggggattgggtagttgtgtgtcttgagagagttt |
3511677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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