View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_low_2 (Length: 566)
Name: NF7970_low_2
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_low_2 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 311 - 566
Target Start/End: Original strand, 2428942 - 2429195
Alignment:
| Q |
311 |
ggttgtgtatgttttgtaacattaaaagaagggttgtaaattgtaatatctttatgtttgaatggagataaagtaatttactccacatagtattgcagta |
410 |
Q |
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| T |
2428942 |
ggttgtgtatgttttgtaacattaaaagaagggttgtaaattgtaatatctttatgtttgaatggagataaagtaatttactccacatagtattgcagta |
2429041 |
T |
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| Q |
411 |
aattttacattagtttgtttattcttgtgtccattgtccactaaatacattaaaaacaaaatgttttctagcatcttaaaagtttgtcctaaactannnn |
510 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429042 |
aattttacattagtttgttta---ttgtgtccattgtccactaaatacagtaaaaacaaaatgttttctagcatcttaaaagtttgtcctaaactatttt |
2429138 |
T |
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| Q |
511 |
nnnaatccttgctcttttgctgtccccacaactctcaact-ccccactctatctttc |
566 |
Q |
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| T |
2429139 |
tttaatccttgctcttttgctgtccccacaactctcaactcccccactctatctttc |
2429195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2428634 - 2428841
Alignment:
| Q |
1 |
gttgtaaccttttgctcttatctccctagcttcgaagtaggtctttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaa |
100 |
Q |
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| T |
2428634 |
gttgtaatcctttgctcttgtctccctagcttcgaagtaggtctttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaa |
2428733 |
T |
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| Q |
101 |
agtgtgctatcttttcaacgcaacttgttaaaaatttnnnnnnntaatattaacatcaaacgcaacgatggttgacagaaagagaaagatggaagatatg |
200 |
Q |
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| T |
2428734 |
agtgtgctatcttttcaacgcaacttgttaaaaattttaaaaaataatattaacatcaaacgcaacgatggttgacagaaagagaaagatggaagatatg |
2428833 |
T |
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| Q |
201 |
acacctgg |
208 |
Q |
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|||||||| |
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| T |
2428834 |
acacctgg |
2428841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 2425330 - 2425521
Alignment:
| Q |
12 |
ttgctcttatctccctagcttcgaagtaggtctttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaaagtgtgctatc |
111 |
Q |
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| T |
2425330 |
ttgctcctgtctccccagcttcaaagtaggtctctgtataatctacccaacatttcaaagctccaacacaagcacaacaacaacatcaaagtgtgctatc |
2425429 |
T |
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| Q |
112 |
ttttcaacgcaacttgttaaaaatttnnnnnnntaatattaacatcaaacgcaacgatggttgacagaaagagaaagatggaagatatgacacc |
205 |
Q |
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| T |
2425430 |
ttttcaacaaaacttgttaataattaagaaaat--atattaacatcaaatgcgacgatgattgacggaaagaggaagatggaagatatgacacc |
2425521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 535
Target Start/End: Original strand, 2425665 - 2425810
Alignment:
| Q |
385 |
aatttactccacatagtattgcagtaaattttacattagtttgtttattcttgtgtccattgtccactaaatacattaaaaacaaaatgttttctagcat |
484 |
Q |
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|||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||| |||| ||||||||||| |
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| T |
2425665 |
aatttattccacatagtattgaagtaaatttcacattagtttgttt-----tgtgtccattgtccactaaataaagtaaaaactaaatattttctagcat |
2425759 |
T |
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| Q |
485 |
cttaaaagtttgtcctaaactannnnnnnaatccttgctcttttgctgtcc |
535 |
Q |
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| T |
2425760 |
tttaaaagtttgttctaaactatttttttaatccttgctcttctgctgtcc |
2425810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 3593192 - 3593130
Alignment:
| Q |
74 |
ccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt |
136 |
Q |
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| T |
3593192 |
ccaacacaaacacaacaacattagcaaagtgcattatcttttcaacaaaacttgttaaaaatt |
3593130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 12167288 - 12167180
Alignment:
| Q |
28 |
agcttcgaagtaggtctttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttg |
127 |
Q |
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| T |
12167288 |
agcttcaaagtaggtctttgtataatccacctagcatttcgaatcttcaacacaaacataacatcaaaagcaaagtgcaatatcttttcaacacaacttg |
12167189 |
T |
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| Q |
128 |
ttaaaaatt |
136 |
Q |
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| T |
12167188 |
ttaaaaatt |
12167180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 39664158 - 39664260
Alignment:
| Q |
34 |
gaagtaggtctttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaa |
133 |
Q |
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||||||||||| |||||||||||||| |||||| | ||||||||||| |||||||| | || ||||||| ||||||||||||| |||||||||||| |
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| T |
39664158 |
gaagtaggtctccgtataatccacccatcatttcgaagctccaacacaaacacaacaatagtagcaaagtgcactatcttttcaacaaaacttgttaaaa |
39664257 |
T |
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| Q |
134 |
att |
136 |
Q |
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||| |
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| T |
39664258 |
att |
39664260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 19592663 - 19592769
Alignment:
| Q |
30 |
cttcgaagtaggtctttgtataatccacccagcatttcaacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgtt |
129 |
Q |
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|||| |||||||||| ||||||| |||| || |||||||| ||||||| || |||||||||||| |||| || |||||||||||| || |||||| |
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| T |
19592663 |
cttcaaagtaggtctatgtataacccactcatcatttcaaagttccaacagaaatacaacaacaatagcaaaatgcattatcttttcaacacatcttgtt |
19592762 |
T |
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| Q |
130 |
aaaaatt |
136 |
Q |
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||||||| |
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| T |
19592763 |
aaaaatt |
19592769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 19598492 - 19598555
Alignment:
| Q |
73 |
tccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt |
136 |
Q |
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||||||| || ||||||||||||| |||| | ||||||||||||| |||||||||||||||| |
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| T |
19598492 |
tccaacataaacacaacaacaatagcaaaatacactatcttttcaacacaacttgttaaaaatt |
19598555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 34312458 - 34312396
Alignment:
| Q |
72 |
ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaa |
134 |
Q |
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||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| |
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| T |
34312458 |
ctccaacacaagcacaacaacaatagcatagtgcactatcttttcaatataacttgttaaaaa |
34312396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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