View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_low_3 (Length: 558)
Name: NF7970_low_3
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 8761485 - 8762028
Alignment:
| Q |
1 |
gaaaggaaacataataaaactatgcttcaagcaaagagtgtgacaaccaatgagacttgcctgtgagtttttgtttgaacttattggt---gactcgttc |
97 |
Q |
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| T |
8761485 |
gaaaggaaacataataaaactatgcttcaagcaaagagtgtgacaaccaatgagacttgcctgtgagtttttgtttgaacttattggtcgtgactcgttc |
8761584 |
T |
|
| Q |
98 |
agcacacacgatgtaatttcaacttgaggagagatatcatcaccacttttatatatctagtgaaatgagtaattttgtgtcaaataattgttataaaagt |
197 |
Q |
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| T |
8761585 |
agcacacacgatgcgatttcaacttgaggagagatatcatcaccacttttatatatctagtgaaatgagtaattttttgtcaaataattgttataaaagt |
8761684 |
T |
|
| Q |
198 |
agatatcttataagaactaaaaacatatttaacactaaaaatttgtatattgcacatttaacaattttctctaaagtcttcatacctcgttatggagatt |
297 |
Q |
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| T |
8761685 |
agatatcttataagaactaaaaacatatttaatactaaaaaattgtatattgcacatttaacaattttctataaagtcttcatacctcgttatggagatt |
8761784 |
T |
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| Q |
298 |
cttgtcatcagccattaagtaatcaaaattgttgaattcaattgtgttgaaatcaacctcattagtgaaagtagagccattatacttctgcacattttcc |
397 |
Q |
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| T |
8761785 |
cttgtcatcagccattaagtaatcaaaattgttgaattcaattgtgttgaaatcaacctcattagtgaaagtagaaccattatacttctgcacattttcc |
8761884 |
T |
|
| Q |
398 |
acaacatttccatttaatttatgttgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactccctc |
497 |
Q |
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| T |
8761885 |
acaacatttccatttaatttatgttgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactccctc |
8761984 |
T |
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| Q |
498 |
ccctaatatcagaaatagaatccagaccaaaccctccttgaacc |
541 |
Q |
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| T |
8761985 |
ccctaatatcagaaatagaatccagaccaaaccctccttgaacc |
8762028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 294 - 541
Target Start/End: Original strand, 8788328 - 8788575
Alignment:
| Q |
294 |
gattcttgtcatcagccattaagtaatcaaaattgttgaattcaattgtgttgaaatcaacctcattagtgaaagtagagccattatacttctgcacatt |
393 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||| ||| |||| |
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| T |
8788328 |
gattcttgtcatcagccattaagaaatcagaattgttgaattcaattttgttgaactcaacctcattagtgaaagtagaatcattaaacttttgctcatt |
8788427 |
T |
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| Q |
394 |
ttccacaacatttccatttaatttatgttgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctagaaactctcttccactc |
493 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8788428 |
ttccacaacatttccatctaatttatgctgaggaaattgtctattctttgaaacatttccttcattattaactgatcctgctggaaactctcttccactc |
8788527 |
T |
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| Q |
494 |
cctcccctaatatcagaaatagaatccagaccaaaccctccttgaacc |
541 |
Q |
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||||||||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
8788528 |
cctcccctaatatcaaaaatagaatccagacgaaacactccttgaacc |
8788575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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