View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_low_5 (Length: 473)
Name: NF7970_low_5
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_low_5 |
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| [»] scaffold0664 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 26 - 457
Target Start/End: Complemental strand, 27120624 - 27120192
Alignment:
| Q |
26 |
gagtaaattttaggtttgttaaagaattatgggaagatataaaagatgattttttgatgtgatggctaaattttatacaaatggtcgaatcgtcaaaggg |
125 |
Q |
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| T |
27120624 |
gagtaaattttaggtttgttaaagaattatgggaagatataaaagatgattttttgaggtgatggctaaattttatacaaatggtcgaatcgtcaaaggg |
27120525 |
T |
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| Q |
126 |
-aaaattgttcatttgtggtgttaataccaaagaagaaaaatccaatgaaaatttcagatttcagacctatatcattgataggatgcatttataaaatca |
224 |
Q |
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| T |
27120524 |
gaaaattgttcatttgtggtgttaatcccaaagaagaaaaatccaatgaaaatttcagatatcagacctatatcattgataggatgaatttataaaatca |
27120425 |
T |
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| Q |
225 |
tattgaagactttggcaaatagattgaaaagagtgatcaaaactatcatatcagacacgaaaatgacgttcatatccggtagacatgttgtagatgggat |
324 |
Q |
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| T |
27120424 |
tattgaagactttggcaaatagattgaaaagagtgatcagaactatcatatcagacacgaaaatgacgttcatatccgacagacatgttgtagatgggat |
27120325 |
T |
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| Q |
325 |
attaattgggaatgaagttgtggatgagacaaagagcaagaacaaagaagttgtgattcatgcttaaaatcgattttgagaagacgtatgactcattgat |
424 |
Q |
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| T |
27120324 |
attaattgcgaatgaagttgtggatgagacaaagagcaagaacaaagaagttgtgatgcatgcttaaaatcgattttgagaagacgtatgactcattgat |
27120225 |
T |
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| Q |
425 |
tgaaattttcttgattttgtaatgttgaagatg |
457 |
Q |
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| T |
27120224 |
tgaaattttcttaattttgtaatgttgaagatg |
27120192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0664 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0664
Description:
Target: scaffold0664; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 374
Target Start/End: Original strand, 4227 - 4517
Alignment:
| Q |
84 |
gtgatggctaaattttatacaaatggtcgaatcgtcaaa-gggaaaattgttcatttgtggtgttaataccaaagaagaaaaatccaatgaaaatttcag |
182 |
Q |
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| T |
4227 |
gtgatggctgaattttatgcaaacagtcgaatggttaaatgggcaaattgctcatttgtggtgttgatcccgaagaataaaaagccagtaaaaatttcag |
4326 |
T |
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| Q |
183 |
atttcagacctatatcattgataggatgcatttataaaatcatattgaagactttggcaaatagattgaaaagagtgatcaaaactatcatatcagacac |
282 |
Q |
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| T |
4327 |
aattcaagcccatatcattgataggtttcatttacaaagttatatcaaag-gtttggcaaatagaatgaaaagtgtgattgattttatcatatcaggcac |
4425 |
T |
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| Q |
283 |
gaaaatgacgttcatatccggtagacatgttgtagatgggatattaattgggaatgaagttgtggatgagacaaagagcaagaacaaagaag |
374 |
Q |
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| T |
4426 |
acaagcggcgttcatttcatgcaggcatattctatacgggatattaactgtgaatgaaattatggatgaggcaaagagaaagaaccaagaag |
4517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 457
Target Start/End: Original strand, 1624425 - 1624702
Alignment:
| Q |
172 |
gaaaatttcagatttcagacctatatcattgataggatgcatttataaaatcatattgaagactttggcaaatagattgaaaagagtgatcaaaactatc |
271 |
Q |
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| T |
1624425 |
gaaaatgtcagatttcaagcttatatcattgataggttgtatttacaaagtcatgtcaaaggttttgacaaatagattgaaaagagtaattagatctatc |
1624524 |
T |
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| Q |
272 |
atatcagacacgaaaatgacgttcatatccggtagacatgttgtagatgggatattaattgggaatgaagttgtggatgagacaaagagcaagaacaaag |
371 |
Q |
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| T |
1624525 |
atatcagacacaa-----acgttcatattaagcacacaaattttagatgggatcctgattgtgaatgaaattatggatggggcaaagagaaagaacaaaa |
1624619 |
T |
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| Q |
372 |
aagttgtgattcatgcttaaaatcgattttgagaagacgtatgactca-ttgattgaaattttcttgattttgtaatgttgaagatg |
457 |
Q |
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| T |
1624620 |
aagttgtg----acgttgaaagttgatttcgagaagatgtatgactcagtcgattagaattttcatgattttgtaatgtttaagatg |
1624702 |
T |
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