View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_low_8 (Length: 400)
Name: NF7970_low_8
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 46601882 - 46601516
Alignment:
| Q |
30 |
ttgtactatcgaaacgtggagcttctaatgagttacgagtggtttgagtatgaggtcacacgctagaataaattatggaccccacccggattaatggttg |
129 |
Q |
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| T |
46601882 |
ttgtactatcgaaacgtggagcttctactgagttacgagtggtttgagtatgaggtcacacgctagaataaattatgggccccacccggattaatggttg |
46601783 |
T |
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| Q |
130 |
attagagccatgaaagtcaaacgaattcaacttgaataatatcacgtgagattcttacagcctggttgtgggacctccttacgtggaggacgttgaactc |
229 |
Q |
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| T |
46601782 |
attagagccatgaaagtcaaacgaattcaacttgaataatatcacgtgagattcttacagcctggttgtgggacctccttacgtggaggacgttgaagtc |
46601683 |
T |
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| Q |
230 |
atatttcaaactgctctttttatggcnnnnnnnnnggaacactctattttttaatcaaaagtttg-------------ttaagatttgtaattcaattca |
316 |
Q |
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| T |
46601682 |
atatttcaaactgctctttttatggctttttttttggaatactctattttttaatcaaaagtttgttaatctagttttttaagagttgtaattcaattca |
46601583 |
T |
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| Q |
317 |
attgtgtatttctcccttaaactaccaaattctgtttttgctcgtttcttttaagaatttcgatttt |
383 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
46601582 |
attctgtatttctcccttaaactaccaaattctgtttttgctcgtttctttaaagaatttctatttt |
46601516 |
T |
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