View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_low_9 (Length: 356)
Name: NF7970_low_9
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 194 - 339
Target Start/End: Complemental strand, 17262151 - 17262007
Alignment:
| Q |
194 |
atcttttcataatgttattgttgctttctagtttaaaaagtgtgtacattaaatttggttcttttaagaatagtagtattattttataagataaaaataa |
293 |
Q |
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| T |
17262151 |
atcttttcataatgttattgttgctttctagtttaaaa-gtgtgtacattaaatttggttcttttaagaatagtagtattattttataagataaaaataa |
17262053 |
T |
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| Q |
294 |
ggcatcttaaccgtaggtagaaaaaagttgaattacagagttagat |
339 |
Q |
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| T |
17262052 |
ggcatcttaaccgtaggtagaaaaaagttgaattacagagttagat |
17262007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 17262253 - 17262147
Alignment:
| Q |
17 |
aattgagtttctctggaggtctgaacttggtttttccattcatacaatataggtggnnnnnnngttgtgttgtgtattagttggaatttattttgggaga |
116 |
Q |
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| T |
17262253 |
aattgagtttctctggaggtctgaacttggtttttccattcatacaatataggtgg-ttttttgttgtgttgtgtattagttggaatttatttcgggaga |
17262155 |
T |
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| Q |
117 |
tgtatctt |
124 |
Q |
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|||||||| |
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| T |
17262154 |
tgtatctt |
17262147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 46469717 - 46469852
Alignment:
| Q |
187 |
tttcatcatcttttcataatgttattgttgctttctagtttaaaaagtgtgtacattaaatttggttcttttaagaatagtagta----ttattttataa |
282 |
Q |
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| T |
46469717 |
tttcatcatcttttcataatgttattgttgctttctaccttaaaaagtgtgtacattaaatttggctctttaaaaaataggagtagcattttttttatag |
46469816 |
T |
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| Q |
283 |
gataaaaataaggcatcttaaccgtaggtagaaaaa |
318 |
Q |
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| T |
46469817 |
gataaaaataaggaaccttaaccataagtaaaaaaa |
46469852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 34549016 - 34549099
Alignment:
| Q |
190 |
catcatcttttcataatgttattgttgctttctag-tttaaaaa-gtgtgtacattaaatttggttcttttaagaatagtagta |
271 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| | |||||| ||||||||| |
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| T |
34549016 |
catcatcttttcataatgttgttgttgctttctagctttaaaaatttgtgtacattaaatttgcgtgttttaaagatagtagta |
34549099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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