View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_high_1 (Length: 723)
Name: NF7971_high_1
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 375 - 711
Target Start/End: Original strand, 10811970 - 10812296
Alignment:
| Q |
375 |
atactagacattacaatcatgcatgatattgcttctaatatttgtacttggttaatttggaataactggaacagagaaatatggttctgccattggtgca |
474 |
Q |
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| T |
10811970 |
atactagacattataatcatgcatgatattgctcctattattt----------aatttggaataactggaacagagaaatatggttctgccattggtgca |
10812059 |
T |
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| Q |
475 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaatgctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
574 |
Q |
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| T |
10812060 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaattctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
10812159 |
T |
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| Q |
575 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctatgttttgtacccttttcaagcgatgatcccttgtttttgtgttctttgaa |
674 |
Q |
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| T |
10812160 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctacgttttgtacccttttcaagcgatgatcccttatttttgtgttctttgaa |
10812259 |
T |
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| Q |
675 |
gttgctttcttcagggtagatgatgctattcttctct |
711 |
Q |
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| T |
10812260 |
gttgctttcttcagggtagatgatgctattcttctct |
10812296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 10811616 - 10811915
Alignment:
| Q |
18 |
ggtagaacttataaaatgaaaagttcc-tttgtacacaatgttgaacacctcaatttatttgagttgtgcaatttgctaaacacaaacagccacaatatt |
116 |
Q |
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| T |
10811616 |
ggtagaacatataaaatggaaatttccctttgtacacattgttgaacacctcaatttatt-gagttgtgcaatttgctaaacacaaacagccacaatatt |
10811714 |
T |
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| Q |
117 |
gaggttaaccagcttttggcnnnnnnnnnnnnnnnngttaccaatgtata-------gcaccaaaataacactaatatatattttggttaaatattacat |
209 |
Q |
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| T |
10811715 |
gaggtgaaccagcttttggcaacaaaataaaaaa--gttatcaatgtatataatatagcaccaaaatattactaatat----tttgtttaaatattacat |
10811808 |
T |
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| Q |
210 |
tcaatacttcattacataaatatgtaattttactacaaaagtagggaacatttaagcaaatctgtgctaattaattactacaaaagttcacctcaaattt |
309 |
Q |
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| T |
10811809 |
tcattacttcattacataaatatgtaattttacttcaaaagtagggaacatttaagcaaatctgtgctaattaattactacaaaagttcacctcaaattt |
10811908 |
T |
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