View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_high_14 (Length: 304)
Name: NF7971_high_14
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 4624227 - 4623946
Alignment:
| Q |
4 |
cttagttctggtatggataaggactgaaaataatactaatacattgtgtccttgtgatattgtaccctaatatcatgccttgttaattttccttcacaaa |
103 |
Q |
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| T |
4624227 |
cttagttctggtatggataaggaatgaaactaatactaatacattgtgtccttgtgatattgtaccctaataccatgccttgttaattttccttcacaaa |
4624128 |
T |
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| Q |
104 |
acataattgtacattttgtttcatatctttttcatggatagcatcgacattactagaaaatttaatggtgtaaagcaataacaatgtcatcatattattg |
203 |
Q |
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| T |
4624127 |
acataattgtacattttgtttcatatctttttcatggatagcatcgacattactagaaaattttatggtgtaaagcaatatcaatgt-atcatattattg |
4624029 |
T |
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| Q |
204 |
aggccaaaattagtagttgagttaccatttttcttcttcaatcaatctctataaatgcacatccttctttcccttgtttttca |
286 |
Q |
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| T |
4624028 |
aggccaaaattagtaattgagttaccatttttcttcttcaatcaatctctataaatgcacatccttctttcccttgtttttca |
4623946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 4298042 - 4298110
Alignment:
| Q |
68 |
ccctaatatcatgccttgttaattttccttcacaaaacataattgtacattttgtttcatatctttttc |
136 |
Q |
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| T |
4298042 |
ccctaatttcatgccttattaatattcctttgcaaaacatagttcaacattttgtttcatatctttttc |
4298110 |
T |
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