View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_high_17 (Length: 275)

Name: NF7971_high_17
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_high_17
NF7971_high_17
[»] chr4 (5 HSPs)
chr4 (73-256)||(30050745-30050929)
chr4 (158-256)||(40863400-40863498)
chr4 (181-256)||(30064745-30064821)
chr4 (23-76)||(30050982-30051035)
chr4 (182-256)||(1055164-1055238)
[»] chr5 (2 HSPs)
chr5 (158-256)||(3981373-3981471)
chr5 (161-254)||(9268374-9268467)
[»] chr2 (1 HSPs)
chr2 (158-256)||(21996901-21996999)
[»] scaffold0087 (1 HSPs)
scaffold0087 (176-256)||(26493-26573)
[»] chr3 (1 HSPs)
chr3 (163-256)||(54174580-54174673)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 30050929 - 30050745
Alignment:
Q  73 ttggcatttagcatacataaatcatagaatttgtgtatcaaacttaaatgcaacatcagccagaatctttttatgtaccatatacttaaccattgattta 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30050929 ttggcatttagcatacataaatcatagaatttgtgtatcaaacttaaatgcaacatcagccagaatctttttatgtaccatatacttaaccattgattta 30050830  T
Q  173 atgttaaataattcaagggttaagattgaagactgggtac-ttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30050829 atgttaaataattcaagggttaagattgaagactgggtactttgcttagtggatttgatgttcaattgttggtatttgcaaatat 30050745  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 40863498 - 40863400
Alignment:
Q  158 ttaaccattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    |||||||||||| |||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  40863498 ttaaccattgatataatattaaataattcaatggtcaagattgaagaatgggtacttgcttagtggatttgatgctcaattgttgctatttgcaaatat 40863400  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 30064821 - 30064745
Alignment:
Q  181 taattcaagggttaagattgaagactgggtactt-gcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30064821 taattcaagggttaagattgaagactgggtactttgcttagtggatttgatgttcaattgttggtatttgcaaatat 30064745  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 30051035 - 30050982
Alignment:
Q  23 agcagtaagcaaacaaataaccaaaactccccagctgtgttacgtttagcttgg 76  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30051035 agcagtaagcaaacaaataaccaaaactctccagctgtgttacgtttagcttgg 30050982  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 1055238 - 1055164
Alignment:
Q  182 aattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    ||||||| || || ||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||    
T  1055238 aattcaatggctaggattgaagaatgggtacttgtttagtgggtttgttgttcaattgttggtatttgcaaatat 1055164  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 3981471 - 3981373
Alignment:
Q  158 ttaaccattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    |||||| ||||| |||| |||||||||||||  |  ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  3981471 ttaaccgttgatataatattaaataattcaattgccaagattgaagaatgggtacttgcttagtggatttgatgctcaattgttgctatttgcaaatat 3981373  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 9268374 - 9268467
Alignment:
Q  161 accattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaat 254  Q
    ||||||||| |||| ||||| ||||||| ||  ||||||||||| || ||||||| ||||||| |||| |||||||||||||||||||||||||    
T  9268374 accattgatataatattaaacaattcaatggccaagattgaagaatgagtacttgtttagtgggtttgttgttcaattgttggtatttgcaaat 9268467  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 21996901 - 21996999
Alignment:
Q  158 ttaaccattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    ||||||||| || |||| |||||||||| || ||  ||||||||||| |||||||||||||||||  ||||||| |||||||||| |||||||||||||    
T  21996901 ttaaccattaatataatattaaataatttaatggccaagattgaagaatgggtacttgcttagtgagtttgatgctcaattgttgctatttgcaaatat 21996999  T

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Target: scaffold0087 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 26573 - 26493
Alignment:
Q  176 ttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    ||||||||||||| ||| ||||||||||| || |||||||  || ||| ||||  ||||||||||||||||||||||||||    
T  26573 ttaaataattcaatggtcaagattgaagaatgagtacttgtgtaatgggtttggggttcaattgttggtatttgcaaatat 26493  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 54174673 - 54174580
Alignment:
Q  163 cattgatttaatgttaaataattcaagggttaagattgaagactgggtacttgcttagtggatttgatgttcaattgttggtatttgcaaatat 256  Q
    ||||||| || | ||||||||||||| || |||||||||||| ||| |||||| ||| | | ||||||||  || | |||||||||||||||||    
T  54174673 cattgatatattattaaataattcaatggctaagattgaagaatggatacttgtttaataggtttgatgtataagtattggtatttgcaaatat 54174580  T

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