View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_high_22 (Length: 260)
Name: NF7971_high_22
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 505306 - 505536
Alignment:
| Q |
9 |
acatcatcacgaacttgttgtctatattctttaaagctgaatttgcggtatacagagggctctttgcaactctcaatcatggtctcgtttgaagggcata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
505306 |
acatcatcacgaacttgttgtctatattctttaaagctgaatttgcggtatatagagggctctttgcaactctcaatcatggtgtcatttgaagggcata |
505405 |
T |
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| Q |
109 |
agaaatacgcaacagaaaacctttctactcttgggtttgtcacaactcgatgctcaacactcttatacactccattgctccaagccttcatgcattacat |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505406 |
agaaatacgcaacagagaacctttctactcttgggtttgtcacaactcgatgctcaacactcttatacactccattgctccaagccttcatgcattacat |
505505 |
T |
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| Q |
209 |
cattaacaaaatatattagtctaatattatt |
239 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
505506 |
cattaacaacatatattagtctaatattatt |
505536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 16702132 - 16702318
Alignment:
| Q |
9 |
acatcatcacgaacttgttgtctatattctttaaagctgaatttgcggtatacagagggctctttgcaactctcaatcatggtctcgtttgaagggcata |
108 |
Q |
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|||||||| ||||||||||| | |||||||| ||||| || | ||| | ||| |||| |||||| ||||| |||| |||| ||||||||||| | |
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| T |
16702132 |
acatcatctcgaacttgttgccgatattcttggaagctaaactctttgtaaagagatggctttttgcagctctctatcacactctcatttgaagggcaca |
16702231 |
T |
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| Q |
109 |
agaaatacgcaacagaaaacctttctactcttgggtttgtcacaactcgatgctcaacactcttatacactccattgctccaagcct |
195 |
Q |
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| T |
16702232 |
agaaatacgccatagagaacctttcaacttttggatttgtaacaactcgatgctcaacactcttgtaaagtccattactccaagcct |
16702318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 17676368 - 17676554
Alignment:
| Q |
9 |
acatcatcacgaacttgttgtctatattctttaaagctgaatttgcggtatacagagggctctttgcaactctcaatcatggtctcgtttgaagggcata |
108 |
Q |
| |
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|||||||| ||||||||||| | |||||||| ||||| || | ||| | ||| |||| |||||| ||||| |||| |||| ||||||||||| | |
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| T |
17676368 |
acatcatctcgaacttgttgccgatattcttggaagctaaactctttgtaaagagatggctttttgcagctctctatcacactctcatttgaagggcaca |
17676467 |
T |
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| Q |
109 |
agaaatacgcaacagaaaacctttctactcttgggtttgtcacaactcgatgctcaacactcttatacactccattgctccaagcct |
195 |
Q |
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|||||||||| | ||| |||||||| ||| |||| ||||| ||||||||||||||||||||||| || | |||||| |||||||||| |
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| T |
17676468 |
agaaatacgccatagagaacctttcaacttttggatttgtaacaactcgatgctcaacactcttgtaaagtccattactccaagcct |
17676554 |
T |
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