View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_13 (Length: 355)
Name: NF7971_low_13
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_13 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 181352 - 181677
Alignment:
| Q |
12 |
atgaagaaaggtaatgatggtgatgatgtgccttaatctgtgtttacggctgtttttacttgttcactagcactggattatgcttnnnnnnncatgcatg |
111 |
Q |
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| T |
181352 |
atgaagaaaggtaatgatggtgatgatgtgccttaatctgtgtttacggctgtttttacttgttcactagcactggattatgcttaaaaaaacatgcatg |
181451 |
T |
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| Q |
112 |
cttatgcttgatatcatagcactcttgtgttgactcctattttcttttgatgctaaaactctaattgcttcttgcttttttcttacctgactaactagca |
211 |
Q |
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| T |
181452 |
cttattcttgatatcatagcactcttgtgttgactcctattttcttttgatgctaaaactctaattgcttcttgcttttttcttacctgactaactagca |
181551 |
T |
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| Q |
212 |
taagaaatatattaatatatatcaacctactttagcgctaccgaatataaaccggtgaaccatcaaattagtctctgactttgcaaaatactctcaaata |
311 |
Q |
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| T |
181552 |
taagaaatatattaatatatatcaacctactttagcgctaccgagtataaaccggtgaaccatcaaattagtctctgactttgcaaaatactctcaaata |
181651 |
T |
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| Q |
312 |
gatcttgagattatgaatatttcaaa |
337 |
Q |
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| T |
181652 |
gatcttgagattatgaatatttcaaa |
181677 |
T |
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Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 32797 - 32752
Alignment:
| Q |
161 |
atgctaaaactctaattgcttcttgcttttttcttacctgactaac |
206 |
Q |
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| T |
32797 |
atgcttaaagtctaattgcttcttgcttttttcgaacctgactaac |
32752 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 959356 - 959320
Alignment:
| Q |
302 |
ctctcaaatagatcttgagattatgaatatttcaaat |
338 |
Q |
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| T |
959356 |
ctctcaaatagatcttgagattatgaagttttcaaat |
959320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 9710042 - 9710110
Alignment:
| Q |
269 |
aaccatcaaattagtctctgactttgcaaaatactctcaaatagatcttgagattatgaatatttcaaa |
337 |
Q |
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| T |
9710042 |
aaccaccaaattagtctctgactttgtaagacgctctcaactagttcctatgattatgaatatttcaaa |
9710110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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