View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_14 (Length: 332)
Name: NF7971_low_14
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 54248019 - 54247714
Alignment:
| Q |
7 |
gtgagatgaaaccctaccaaaaattgcggcattgggatggaaatagaagtaagaagttgatgatgaaatttggaaatggaagtgatgcattgttgtttga |
106 |
Q |
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| T |
54248019 |
gtgaaatgaaaccctaccaaaaattgcggcattgggatggaaatagaagtaagaagttgatgatgaaatttggaaatggaagtgatgcattgttgtttga |
54247920 |
T |
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| Q |
107 |
attgttgggttgaaattccatttgtgataaggaaacgatgnnnnnnnnnnnnnnnnnnggtgctactattgctatcgatgaaaaaggggcaaaaaggcta |
206 |
Q |
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| T |
54247919 |
attgttgggttgaaattccatttgtgataaggaagcgatgtcttcttcttcttct---ggtgctactattgctatcgatgaaaaaggggcaagaaggcta |
54247823 |
T |
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| Q |
207 |
catttttgaaagaagtttgagaattcaaaattaagaatgattgtgtaaaattgaaacctaattgaagatagatacttacgcgaacagaaagcgagtgaaa |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54247822 |
catttttgaaagaagtttgagagttcaaaattaagaatgattgtgtaaaattgaaacctaattgaagatagatacttacgcgaacagaaagcgagtgaaa |
54247723 |
T |
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| Q |
307 |
gtgaagtgt |
315 |
Q |
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| T |
54247722 |
gtgaagtgt |
54247714 |
T |
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