View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_low_15 (Length: 329)

Name: NF7971_low_15
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_low_15
NF7971_low_15
[»] chr6 (3 HSPs)
chr6 (1-316)||(33050853-33051168)
chr6 (208-316)||(33032816-33032926)
chr6 (1-54)||(33032516-33032569)
[»] chr4 (2 HSPs)
chr4 (235-316)||(8264038-8264119)
chr4 (235-316)||(8277456-8277537)
[»] chr1 (2 HSPs)
chr1 (1-55)||(38903933-38903987)
chr1 (256-316)||(9901039-9901098)
[»] chr8 (1 HSPs)
chr8 (1-42)||(43522066-43522107)
[»] chr7 (1 HSPs)
chr7 (241-316)||(7975171-7975245)
[»] chr5 (1 HSPs)
chr5 (241-316)||(13838165-13838239)
[»] chr3 (1 HSPs)
chr3 (241-316)||(1293818-1293892)
[»] chr2 (1 HSPs)
chr2 (241-316)||(26543722-26543796)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33050853 - 33051168
Alignment:
Q  1 cttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattcttctgtaattttaccaatgtttcttaggtatatccaagttggattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050853 cttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattcttctgtaattttaccaatgtttcttaggtatatccaagttggattt 33050952  T
Q  101 aatttagtgtctttatgtttcaaatttatcattgttggttcaaacttgtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050953 aatttagtgtctttatgtttcaaatttatcattgttggttcaaacttgtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcaga 33051052  T
Q  201 ttttttctcaattacatgttactttgaaatgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33051053 ttttttctcaattacatgttactttgaaatgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataattt 33051152  T
Q  301 tctcatacccaatatt 316  Q
    ||||||||||||||||    
T  33051153 tctcatacccaatatt 33051168  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 33032816 - 33032926
Alignment:
Q  208 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctca 305  Q
    |||||||||| ||||| |||| |  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33032816 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctca 33032915  T
Q  306 tacccaatatt 316  Q
    |||||| ||||    
T  33032916 tacccattatt 33032926  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33032516 - 33032569
Alignment:
Q  1 cttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattc 54  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  33032516 cttgagagttaatgctgctgtatccttccttggatgtctgaggtctaattattc 33032569  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 8264038 - 8264119
Alignment:
Q  235 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatt 8264119  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 8277456 - 8277537
Alignment:
Q  235 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatt 8277537  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38903933 - 38903987
Alignment:
Q  1 cttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattct 55  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  38903933 cttgagagttaatgctgctatttccttccttggatgtctgaggtcaaattattct 38903987  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 9901098 - 9901039
Alignment:
Q  256 tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||| ||||    
T  9901098 tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcatacccattatt 9901039  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43522066 - 43522107
Alignment:
Q  1 cttgagagttaatgctgctctatccttccttggatgcctgag 42  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  43522066 cttgagagttaatgctgctttatccttccttggatgtctgag 43522107  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 7975171 - 7975245
Alignment:
Q  241 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 7975245  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 13838239 - 13838165
Alignment:
Q  241 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 13838165  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 1293892 - 1293818
Alignment:
Q  241 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 1293818  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 26543796 - 26543722
Alignment:
Q  241 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 316  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 26543722  T

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