View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_low_16 (Length: 326)

Name: NF7971_low_16
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_low_16
NF7971_low_16
[»] chr8 (3 HSPs)
chr8 (1-311)||(15348791-15349101)
chr8 (83-190)||(12195317-12195424)
chr8 (83-190)||(12439745-12439852)
[»] chr4 (18 HSPs)
chr4 (150-292)||(48898794-48898936)
chr4 (84-190)||(48891430-48891536)
chr4 (67-176)||(48170533-48170642)
chr4 (19-108)||(48147756-48147845)
chr4 (56-121)||(48898694-48898759)
chr4 (90-190)||(48852690-48852790)
chr4 (60-108)||(48735421-48735469)
chr4 (249-292)||(48705238-48705281)
chr4 (249-292)||(48903120-48903163)
chr4 (249-292)||(49044045-49044088)
chr4 (254-292)||(7773684-7773722)
chr4 (75-137)||(7877738-7877800)
chr4 (254-292)||(48852851-48852889)
chr4 (249-279)||(48870713-48870743)
chr4 (249-279)||(48886399-48886429)
chr4 (248-282)||(50250637-50250671)
chr4 (3-116)||(48705390-48705503)
chr4 (149-190)||(49048530-49048571)
[»] chr5 (1 HSPs)
chr5 (57-121)||(29696197-29696261)
[»] chr3 (2 HSPs)
chr3 (72-124)||(47451930-47451982)
chr3 (67-119)||(11015544-11015596)
[»] chr6 (1 HSPs)
chr6 (254-292)||(21015994-21016032)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 15348791 - 15349101
Alignment:
Q  1 ccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348791 ccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattactt 15348890  T
Q  101 ggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaaatggactgccct 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348891 ggtggttttaatgtcctatgatcccgccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaaatggactgccct 15348990  T
Q  201 tattgcccttataggagtaattttgatgagatgcccaaagcagggtgtctctataatggggctattcattggttggcttttcatcgtgattttccttggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348991 tattgcccttataggagtaattttgatgagatgcccaaagcagggtgtctctataatggggctattcattggttggcttttcatcgtgattttccttggc 15349090  T
Q  301 gtgataacttt 311  Q
    |||||||||||    
T  15349091 gtgataacttt 15349101  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 12195317 - 12195424
Alignment:
Q  83 attaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtgg 182  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||| ||||||||||||  ||||    
T  12195317 attaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtgg 12195416  T
Q  183 aaggaaat 190  Q
    || |||||    
T  12195417 aatgaaat 12195424  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 12439745 - 12439852
Alignment:
Q  83 attaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtgg 182  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||| ||||||||||||  ||||    
T  12439745 attaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtgg 12439844  T
Q  183 aaggaaat 190  Q
    || |||||    
T  12439845 aatgaaat 12439852  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 48898794 - 48898936
Alignment:
Q  150 ttggagtttttctcgttgagagataatgtgtggaaggaaatggactgcccttattgcccttataggagtaattttgatgagatgcccaaagcagggtgtc 249  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||| || | ||||||||||  ||||  ||| |||| |  ||| | |||||||  |    
T  48898794 ttggagtttttctcattgagagataatgtgtggaaggaaattgagtgcactcaatgcccttatacaagtacctttaatgataatccccatgcagggtcac 48898893  T
Q  250 tctataatggggctattcattggttggcttttcatcgtgattt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48898894 tctataatggggctattcattggttggcttttcatcgtgattt 48898936  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 48891430 - 48891536
Alignment:
Q  84 ttaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtgga 183  Q
    |||| ||||||||| |||||||||| | ||||||||||| | |||||||||  || | || || |||||||||||||||| |||||||||||| ||||||    
T  48891430 ttaagagatgattagttggtggtttcagtgtcctatgatacaaccttagatggtaatcatccgcgtttggagtttttctcattgagagataatatgtgga 48891529  T
Q  184 aggaaat 190  Q
    | |||||    
T  48891530 aagaaat 48891536  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 48170642 - 48170533
Alignment:
Q  67 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgtt 166  Q
    |||| |||||||| || |||| |||||||||||| ||||||| | |||||| |||||| ||||||| | ||  ||||||| ||||||| |||||||| ||    
T  48170642 gttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgatccaaccttagttcattgttattcgcgtttggaatttttctcatt 48170543  T
Q  167 gagagataat 176  Q
     |||||||||    
T  48170542 aagagataat 48170533  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48147845 - 48147756
Alignment:
Q  19 tacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 108  Q
    |||||||||| ||| ||||||  || ||||| || | ||||| |||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  48147845 tacctttgtctccttttggttccaatttagatgcagcatattactatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 48898694 - 48898759
Alignment:
Q  56 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatga 121  Q
    |||||||||| |||| |||||||| || |||| |||||||||||| ||||||||| ||||||||||    
T  48898694 atatttctatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcctatga 48898759  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 48852690 - 48852790
Alignment:
Q  90 gatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaaa 189  Q
    |||||||||||||| |||||||||||||||||| | ||||||| |||| |||  ||   ||| ||||||||||| ||||||| |||||  ||||| ||||    
T  48852690 gatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaa 48852789  T
Q  190 t 190  Q
    |    
T  48852790 t 48852790  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  60 ttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 108  Q
    |||||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 48705281 - 48705238
Alignment:
Q  249 ctctataatggggctattcattggttggcttttcatcgtgattt 292  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgattt 48705238  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 48903120 - 48903163
Alignment:
Q  249 ctctataatggggctattcattggttggcttttcatcgtgattt 292  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  48903120 ctctttaatggggctattcattagttggcttttcatcatgattt 48903163  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 49044088 - 49044045
Alignment:
Q  249 ctctataatggggctattcattggttggcttttcatcgtgattt 292  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||    
T  49044088 ctctttaatggggctattcactggttggcttttcatcttgattt 49044045  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 7773722 - 7773684
Alignment:
Q  254 taatggggctattcattggttggcttttcatcgtgattt 292  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  7773722 taatggggctattcattggttggctttgcgtcgtgattt 7773684  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 7877738 - 7877800
Alignment:
Q  75 tatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccaccttagataat 137  Q
    |||||||||| || |||||||||||||||||||| | |||||||| |||| ||| ||| ||||    
T  7877738 tatgaccaatcaagagatgattacttggtggtttcattgtcctataatccaaccatagttaat 7877800  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 48852851 - 48852889
Alignment:
Q  254 taatggggctattcattggttggcttttcatcgtgattt 292  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  48852851 taatggggctattcattggttggcttttcgtcatgattt 48852889  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 279
Target Start/End: Original strand, 48870713 - 48870743
Alignment:
Q  249 ctctataatggggctattcattggttggctt 279  Q
    |||||||||||||||||||||||||||||||    
T  48870713 ctctataatggggctattcattggttggctt 48870743  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 279
Target Start/End: Original strand, 48886399 - 48886429
Alignment:
Q  249 ctctataatggggctattcattggttggctt 279  Q
    |||||||||||||||||||||||||||||||    
T  48886399 ctctataatggggctattcattggttggctt 48886429  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 50250671 - 50250637
Alignment:
Q  248 tctctataatggggctattcattggttggcttttc 282  Q
    ||||| |||||||||||||||||||||||||||||    
T  50250671 tctctttaatggggctattcattggttggcttttc 50250637  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 48705503 - 48705390
Alignment:
Q  3 ggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttgg 102  Q
    |||||||||| | || |||||||||| ||| ||||||   | ||||| || ||||||||| || |||| || ||||| || | || ||||||||||||||    
T  48705503 ggatttcacaaacaaatacctttgtcaccttttggttccgatttagatgcagaatatttccatggttttggatatgatcagtcaacagatgattacttgg 48705404  T
Q  103 tggttttaatgtcc 116  Q
    | |||| |||||||    
T  48705403 ttgtttcaatgtcc 48705390  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 49048571 - 49048530
Alignment:
Q  149 tttggagtttttctcgttgagagataatgtgtggaaggaaat 190  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  49048571 tttggagtttttctcgttgagagataatatatggaaagaaat 49048530  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 29696197 - 29696261
Alignment:
Q  57 tatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatga 121  Q
    ||||||||| |||| ||||||||| | | || |||||||||||||||| ||| ||||||||||||    
T  29696197 tatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 47451982 - 47451930
Alignment:
Q  72 gggtatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcc 124  Q
    ||||||||| | |||| |||||||||||| ||||||||||||||| |||||||    
T  47451982 gggtatgacgagttaacagatgattacttagtggttttaatgtccgatgatcc 47451930  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 11015596 - 11015544
Alignment:
Q  67 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctat 119  Q
    |||| ||||||||||| |||| |||||||||||||||||| | | ||||||||    
T  11015596 gttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 21015994 - 21016032
Alignment:
Q  254 taatggggctattcattggttggcttttcatcgtgattt 292  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  21015994 taatggggctattcattggttggcttttcgtcatgattt 21016032  T

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