View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7971_low_17 (Length: 322)
Name: NF7971_low_17
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 39154257 - 39154567
Alignment:
| Q |
1 |
catttactatatatcagt----tataacttattcaatccataccacattgatttttcaaaacatatactacaaggctacaaacttggttttaatatgcct |
96 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39154257 |
catttactatatatcagtggagtataacttattcaatccataccacattgatttttcaaaacatatactacaaggctaaaaacttggttttaatatgcct |
39154356 |
T |
|
| Q |
97 |
acaataagtgaatgatataatttaacttctagaatccaatgtaacgatataacatgactcttaaaaaatatttcttagcaaaaagtctcatcatattctt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39154357 |
acaataagtgaatgatataatttaacttctagaatccaatgtaacgatataacatgactcttatgaaatatttcttagcaaaaagtctcatcatattctt |
39154456 |
T |
|
| Q |
197 |
tttatggtggaaacaacggcttaaaaagtggattttccatcttccaccattgataacaatgtaacaggttcctttgggatgttatttggaaaataaatat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39154457 |
tttatggtggaaacaacggcttaaaaagtggattttccatcttccaccattgacaacaatgtaacaggttcctttgggatgttatttggacaataaatat |
39154556 |
T |
|
| Q |
297 |
acgtcctttgt |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
39154557 |
acgtcctttgt |
39154567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 39144476 - 39144519
Alignment:
| Q |
93 |
gcctacaataagtgaatgatataatttaacttctagaatccaat |
136 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
39144476 |
gcctacgataagtgagtgatataattaaacttctagaatccaat |
39144519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 40111932 - 40111980
Alignment:
| Q |
92 |
tgcctacaataagtgaatgatataatttaacttctagaatccaatgtaa |
140 |
Q |
| |
|
|||| |||| |||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
40111932 |
tgccaacaaaaagtgagtgatataagtaaacttctagaatccaatgtaa |
40111980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University