View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_20 (Length: 280)
Name: NF7971_low_20
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 4663772 - 4664003
Alignment:
| Q |
22 |
aaagagaaatagaaaatctcgatattgaagtttagattgtagcagtagaccttattttaatacctattatctatgtattgacaattatatagtgttaata |
121 |
Q |
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| T |
4663772 |
aaagagaaatagaaaatctcgatattgaagtttagattgtagcaatagaccttattttattg----------aagt-ttgacaattata--gtgttaata |
4663858 |
T |
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| Q |
122 |
agtttcaataatggtgaattttggttgcagctgaggcatacggattaccatatttgcaaccatatctgaaagtaatcaaaagcaatcaaatcatccgcaa |
221 |
Q |
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| T |
4663859 |
attttcaataatggtgaattttggttgcagctgaggcatacggattaccatatttgcaaccatatctgaaagtaatcaaaagcaatcaaatcatccgcaa |
4663958 |
T |
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| Q |
222 |
tggagtaaa-tttgcagtcgctggagccacagcgcttgatgtaga |
265 |
Q |
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| T |
4663959 |
tggagtaaattttgcagtcgctggagccacagcgcttggtgtaga |
4664003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 4667202 - 4667446
Alignment:
| Q |
22 |
aaagagaaatagaaaatctcgatattgaagtttagattgtagcagtagaccttattttaatacctattatctatgtattgacaattatatagtgttaata |
121 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| | ||| ||||| ||||||||||||| ||||||||||||| ||| | |||||||||| |
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| T |
4667202 |
aaagagaaatagaaaatctcgatatcaaaggttagattgtaaccgtaaaccttgttttaatacctatcatctatgtattgaatattgttgagtgttaata |
4667301 |
T |
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| Q |
122 |
agtttcaataatggtgaattttggttgcagctgaggcatacggattaccatatttgcaaccatatctgaaagtaatcaaaagcaatcaaatcatccgcaa |
221 |
Q |
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| T |
4667302 |
attttcaataatggtgagttttggttatagctgtggcatacgaattaccatatttgcaaccatatctgaaagtgatcaaaagtcatcaaatcatccgcaa |
4667401 |
T |
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| Q |
222 |
tggagtaaa-tttgcagtcgctggagccacagcgcttgatgtaga |
265 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
4667402 |
aggagtaaattttgcagtcgctggagccacagctcttgatgtaga |
4667446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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