View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_22 (Length: 274)
Name: NF7971_low_22
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 1623283 - 1623532
Alignment:
| Q |
8 |
gagcagaacctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaagg |
107 |
Q |
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| T |
1623283 |
gagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactcttgagaattgttgccaagg |
1623382 |
T |
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| Q |
108 |
ccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623383 |
ccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggg |
1623482 |
T |
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| Q |
208 |
tcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctt |
257 |
Q |
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| T |
1623483 |
tcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctt |
1623532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 1629470 - 1629708
Alignment:
| Q |
19 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
1629470 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggtctgcccaaga |
1629569 |
T |
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| Q |
119 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgacc |
218 |
Q |
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| T |
1629570 |
aggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctcgacc |
1629669 |
T |
|
| Q |
219 |
ttgggctgtgatcatgttagcttggccatccaaaggctt |
257 |
Q |
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| T |
1629670 |
ttgggcagtgatcatgtttgcttggccatctaaaggctt |
1629708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 1606172 - 1606407
Alignment:
| Q |
19 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
118 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
1606172 |
gtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatcaccataactcttgaatattgttgccaaggcctgcccaaga |
1606271 |
T |
|
| Q |
119 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1606272 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctcgacc |
1606371 |
T |
|
| Q |
219 |
ttgggctgtgatcatgttagcttggccatccaaagg |
254 |
Q |
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| T |
1606372 |
ttgggctgtgatcatgttagcttgaccatctaaagg |
1606407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 10821228 - 10820993
Alignment:
| Q |
19 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
10821228 |
gtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatcaccataactcttgaatattgttgccaaggtcttcctaaga |
10821129 |
T |
|
| Q |
119 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
10821128 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggatcacctcgacc |
10821029 |
T |
|
| Q |
219 |
ttgggctgtgatcatgttagcttggccatccaaagg |
254 |
Q |
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|||||| ||||||||||||||||||||||| ||||| |
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| T |
10821028 |
ttgggcagtgatcatgttagcttggccatctaaagg |
10820993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 18780988 - 18781226
Alignment:
| Q |
19 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
18780988 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactcttgaatattgttgccaaggcctgcccaaga |
18781087 |
T |
|
| Q |
119 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgacc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18781088 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctcgacc |
18781187 |
T |
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| Q |
219 |
ttgggctgtgatcatgttagcttggccatccaaaggctt |
257 |
Q |
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| T |
18781188 |
ttgggccgtgatcatgtttgcttggccatctaaaggctt |
18781226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 12802560 - 12802780
Alignment:
| Q |
25 |
ccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggttt |
124 |
Q |
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| T |
12802560 |
ccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccagggccggcccaagaaggtgt |
12802659 |
T |
|
| Q |
125 |
tgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttgggc |
224 |
Q |
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| T |
12802660 |
tgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatgggtcatcacgaccttgggc |
12802759 |
T |
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| Q |
225 |
tgtgatcatgttagcttggcc |
245 |
Q |
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| T |
12802760 |
cgtgatcatgtttgcttggcc |
12802780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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