View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_28 (Length: 255)
Name: NF7971_low_28
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13309526 - 13309290
Alignment:
| Q |
1 |
ggggagaatgtatagaaagagagaaatgaaggatgagattaattcttttatgctgtcaaccaatcatgatccatcattagtatgatttttaaggtagatg |
100 |
Q |
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| T |
13309526 |
ggggagaatgtatagaaagagagaaatgaaggatgagattaattcttttatgctgtcaaccaatcatgatccatcattagtatgatttttaaggtagatg |
13309427 |
T |
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| Q |
101 |
tgtttaaattcaaatatctgtaatgatcaaatagttatgattacttgacatgtgaaaaatatttacattgtcgatgcatatcaacttaatccgtaaaaga |
200 |
Q |
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| T |
13309426 |
tgtttaaattcaaatatctgtaatgatcaaatagttatgattacttgacatgtgaaaaatatttacattgtcgatgcatatcaacttaatccgtaaaaga |
13309327 |
T |
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| Q |
201 |
tatgcacacgtcttctagcataatcatagtaattttt |
237 |
Q |
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| T |
13309326 |
tatgcacacgtcttctagcataatcatagtaattttt |
13309290 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 27839491 - 27839429
Alignment:
| Q |
87 |
ttttaaggtagatgtgtttaaattcaaatatctgtaatgatcaaatagttatgattacttgaca |
150 |
Q |
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| T |
27839491 |
ttttaaggtagatatgattaaagtcaa-tatctgtaatgatctaatggttatgattaattgaca |
27839429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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