View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_low_3 (Length: 619)

Name: NF7971_low_3
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_low_3
NF7971_low_3
[»] chr1 (4 HSPs)
chr1 (4-87)||(49713217-49713300)
chr1 (4-87)||(49655695-49655778)
chr1 (167-291)||(18655503-18655627)
chr1 (170-232)||(9850028-9850090)
[»] chr6 (9 HSPs)
chr6 (167-316)||(13562201-13562356)
chr6 (167-316)||(13561334-13561489)
chr6 (168-295)||(10673666-10673793)
chr6 (366-445)||(9928083-9928172)
chr6 (169-279)||(25439055-25439165)
chr6 (167-241)||(24318050-24318124)
chr6 (376-411)||(27439180-27439215)
chr6 (167-232)||(27108170-27108234)
chr6 (167-232)||(27149967-27150031)
[»] chr5 (12 HSPs)
chr5 (167-295)||(38603682-38603810)
chr5 (167-295)||(42962079-42962207)
chr5 (167-237)||(39050744-39050814)
chr5 (167-232)||(8358224-8358289)
chr5 (167-279)||(42963163-42963275)
chr5 (167-316)||(39051578-39051732)
chr5 (167-237)||(5163716-5163786)
chr5 (167-315)||(38602718-38602873)
chr5 (370-411)||(38473221-38473262)
chr5 (167-232)||(8359409-8359474)
chr5 (167-250)||(301416-301499)
chr5 (189-263)||(4904280-4904355)
[»] chr4 (10 HSPs)
chr4 (167-295)||(31204610-31204738)
chr4 (167-294)||(21569306-21569433)
chr4 (167-295)||(21570355-21570483)
chr4 (167-295)||(31205641-31205769)
chr4 (167-232)||(54823253-54823318)
chr4 (175-241)||(44219014-44219080)
chr4 (170-232)||(54822437-54822499)
chr4 (167-228)||(44217629-44217690)
chr4 (167-263)||(47573608-47573704)
chr4 (167-238)||(42698650-42698721)
[»] chr2 (7 HSPs)
chr2 (167-316)||(38593087-38593241)
chr2 (167-316)||(38596683-38596837)
chr2 (167-294)||(10330762-10330888)
chr2 (167-294)||(371900-372027)
chr2 (167-316)||(38593956-38594107)
chr2 (167-316)||(38597552-38597703)
chr2 (175-295)||(370831-370951)
[»] chr3 (10 HSPs)
chr3 (167-295)||(50002469-50002597)
chr3 (167-295)||(50003155-50003283)
chr3 (167-295)||(21248189-21248317)
chr3 (168-295)||(27225490-27225617)
chr3 (173-294)||(5409400-5409521)
chr3 (168-288)||(27226478-27226598)
chr3 (167-232)||(55387641-55387706)
chr3 (189-295)||(45730714-45730820)
chr3 (169-294)||(5384479-5384604)
chr3 (167-237)||(21247292-21247362)
[»] chr7 (13 HSPs)
chr7 (167-294)||(23153563-23153690)
chr7 (167-295)||(35044675-35044804)
chr7 (167-295)||(36584837-36584965)
chr7 (175-295)||(47536782-47536902)
chr7 (167-294)||(47535715-47535842)
chr7 (167-281)||(43704398-43704512)
chr7 (167-283)||(35045838-35045954)
chr7 (167-295)||(40321125-40321253)
chr7 (179-295)||(42520289-42520405)
chr7 (167-295)||(42521190-42521318)
chr7 (168-237)||(40322225-40322295)
chr7 (167-295)||(43703109-43703237)
chr7 (189-265)||(40881168-40881245)
[»] chr8 (8 HSPs)
chr8 (167-295)||(41767096-41767224)
chr8 (167-291)||(44770550-44770674)
chr8 (167-238)||(43415957-43416028)
chr8 (181-295)||(44769749-44769862)
chr8 (167-295)||(12820031-12820158)
chr8 (167-228)||(43414437-43414498)
chr8 (167-242)||(23768471-23768545)
chr8 (167-263)||(9189450-9189546)
[»] scaffold0013 (2 HSPs)
scaffold0013 (166-295)||(32157-32285)
scaffold0013 (166-295)||(27886-28016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (189-265)||(85038-85115)
[»] scaffold0003 (1 HSPs)
scaffold0003 (376-411)||(48147-48182)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 49713217 - 49713300
Alignment:
Q  4 aggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcatcctgcaaagtgtgatacaggtttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49713217 aggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcattctgcaaaatgtgatacaggtttg 49713300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 49655695 - 49655778
Alignment:
Q  4 aggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcatcctgcaaagtgtgatacaggtttg 87  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49655695 aggtgtggctttgataaagatgtatacaatttcaagtgttactgcactgatagagttcattctgcaaaatgtgatacaggtttg 49655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 18655503 - 18655627
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| |||||| |  ||||||||| ||||||| |||||||||||| | |||||||||||| |||   ||   |||||| |||||||||| ||||    
T  18655503 ttaaacgtttcaaaatgtttatttatctttgttttaatgatcaatttagtccttttttattaattttaaaatccttaaaaagaagaccgttggat-aaag 18655601  T
Q  266 gaggtccatcagatctaaaagtgtat 291  Q
    ||||||||| |||||||| |||||||    
T  18655602 gaggtccattagatctaatagtgtat 18655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 9850028 - 9850090
Alignment:
Q  170 aacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||  || ||||||||||||||    
T  9850028 aacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatcctattttattaattt 9850090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 13562356 - 13562201
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||||| ||||  |||  |||||| || ||||||| ||||    
T  13562356 ttaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcctattttattaattttaaactcctaaaaaagaagactgttggat-aaag 13562258  T
Q  266 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 316  Q
    ||| |||||||||||||| |||||||      |||||||||||||||||||||||||    
T  13562257 gagatccatcagatctaacagtgtatcaccaacacctaatttatatcactttcttca 13562201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 13561334 - 13561489
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||| ||||||||| || || |||||||||| ||| |||||||||||||| ||||  ||   |||||| | |||||||| ||||    
T  13561334 ttaaacgtttcaaaatggtcttttatctttgttatagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagatcgttggat-aaag 13561432  T
Q  266 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 316  Q
     ||||||||||||||||| |||||||      |||||||||||||||||||||||||    
T  13561433 aaggtccatcagatctaatagtgtatcaccaacacctaatttatatcactttcttca 13561489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 10673666 - 10673793
Alignment:
Q  168 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 266  Q
    ||||||||| ||  ||||||||||| ||| ||||  |||||||||||||| |||||||||||||| |||||| |   |||||| ||||||| || |||||    
T  10673666 taaacgtttcaatttggtcctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaacctttcaaaaagaagaccgttgaat-aaagg 10673764  T
Q  267 aggtccatcagatctaaaagtgtatcacc 295  Q
    |||||||||| ||||||| ||||||||||    
T  10673765 aggtccatcatatctaaaggtgtatcacc 10673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 9928172 - 9928083
Alignment:
Q  366 tctcatcactacacctccaatttcttaaatccagaaatcatcaaca----------tcaacatgatgatgatgatcatcaatttcttcat 445  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  9928172 tctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaatcaacatcaacatgatgatgatcatcatcaatttcttcat 9928083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 25439165 - 25439055
Alignment:
Q  169 aaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagga 267  Q
    |||||||| ||  ||||| ||||||||| |||| || |||||||| |||  ||||||||||||| ||||||||   |||||| |||||||||| ||||||    
T  25439165 aaacgtttcaatttggtcttttatctttgttttcattatcaatttggtccaattttattaattttaaacctcttaaaaagaagaccgttggat-aaagga 25439067  T
Q  268 ggtccatcagat 279  Q
    ||| ||||||||    
T  25439066 ggttcatcagat 25439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 24318124 - 24318050
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctct 241  Q
    |||||| ||||||  ||||||||||||||| ||||  ||||||||||  ||  ||||||||||||||||||||||    
T  24318124 ttaaactttttaatttggtcctttatctttgttttcgtcatcaatttgatcccattttattaatttcaaacctct 24318050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 27439180 - 27439215
Alignment:
Q  376 acacctccaatttcttaaatccagaaatcatcaaca 411  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27439180 acacctccaatttcttaaatccagaaatcgtcaaca 27439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 27108234 - 27108170
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    |||||||||||||  ||| |||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  27108234 ttaaacgttttaatttggacctt-atctttgttttcatcatcgatttagtcctattttattaattt 27108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 27150031 - 27149967
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    |||||||||||||  ||| |||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  27150031 ttaaacgttttaatttggacctt-atctttgttttcatcatcgatttagtcctattttattaattt 27149967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 38603810 - 38603682
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||||  |||  |||||| |||||||||| ||||    
T  38603810 ttaaacttttcaaaatggtcctttatctttgttttagtcatcaatttggtcctattttattaattttaaactcctaaaaaagaagaccgttggat-aaag 38603712  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
     ||||||||||||||||| |||||||||||    
T  38603711 aaggtccatcagatctaatagtgtatcacc 38603682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 42962079 - 42962207
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    ||||||| |||||| ||||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  42962079 ttaaacgctttaaattggtcctttatctttgttttcatcatcaatttggtcctattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 42962177  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||| || ||||||||  ||||||||||    
T  42962178 gaggtctataagatctaatggtgtatcacc 42962207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 39050744 - 39050814
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 237  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| ||||    
T  39050744 ttaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcatattttattaattttaaac 39050814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 8358224 - 8358289
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  8358224 ttaaacgttttaaaatggtcttttatctttgttttagtcatcattttggtcatattttattaattt 8358289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 42963275 - 42963163
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 265  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||| || |||||||||||||| ||||||||   |||||  |||||||||| ||||    
T  42963275 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttaatcctattttattaattttaaacctctcaaaaagatgaccgttggat-aaag 42963177  T
Q  266 gaggtccatcagat 279  Q
    ||||||||||||||    
T  42963176 gaggtccatcagat 42963163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 39051732 - 39051578
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaaaccgttggataaaagg 266  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||||||  || |||||||||||||| ||||  ||   ||| | |||| | ||| ||||     
T  39051732 ttaaatgtttcaaaatggtcctttatctttgttttagtcatcaatttgatcctattttattaattttaaactcctcaaaaaaagaccgctagat-aaaga 39051634  T
Q  267 aggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 316  Q
    ||||||||||||||||| |||||||      |||||||||||||||| ||||||||    
T  39051633 aggtccatcagatctaatagtgtatcatcaacacctaatttatatcattttcttca 39051578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 5163716 - 5163786
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 237  Q
    ||||| |||| |||||| |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  5163716 ttaaatgtttcaaaatgatcctttatctttgttttaattatcaatttggtcatattttattaattttaaac 5163786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 38602718 - 38602873
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatc-tttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaa 264  Q
    |||||||||||||||||||||| |||| ||| ||||| |||| ||||| |||||||||||||||||| ||||  ||   |||||| || |||||||||||    
T  38602718 ttaaacgttttaaaatggtcctctatcttttattttagtcataaatttggtcatattttattaattttaaactcctcaaaaagaagacagttggataaaa 38602817  T
Q  265 ggaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttc 315  Q
     ||  | |||||||||||| | |||||||||      ||||||||||||||||||||    
T  38602818 -gatattcatcagatctaacaatgtatcaccaacacttaatttatatcactttcttc 38602873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 38473262 - 38473221
Alignment:
Q  370 atcactacacctccaatttcttaaatccagaaatcatcaaca 411  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38473262 atcactacacctccaattttttaaatccagaaatcatcaaca 38473221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 8359474 - 8359409
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    ||||| |||||||||||||| ||||||||| ||||| |||||| ||| ||| |||||||| |||||    
T  8359474 ttaaaagttttaaaatggtcttttatctttgttttagtcatcattttggtcctattttataaattt 8359409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 301416 - 301499
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa 250  Q
    ||||||||| ||||||| || ||| ||||| |||||  |||||||||  || |||||||||||||| ||||||||  |||||||    
T  301416 ttaaacgttataaaatgatcttttctctttgttttagccatcaatttgatcctattttattaattttaaacctcttagaaagaa 301499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 4904280 - 4904355
Alignment:
Q  189 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 263  Q
    |||||||| |||| |||||| |||| |||||||||||||||||| |||  ||||  |||||| |||||||||||||    
T  4904280 ttatctttgttttcatcatcgatttggtcatattttattaattttaaatttctaaaaaagaagaccgttggataaa 4904355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 31204610 - 31204738
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||| ||||    
T  31204610 ttaaacgtttcaaaatggtcatttatctttattttaatcatcaatttggtcctattttattaattttaaactccttaaaaagaagaccgttggat-aaag 31204708  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    || ||||||||||||||| |||||||||||    
T  31204709 gatgtccatcagatctaacagtgtatcacc 31204738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 21569306 - 21569433
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||| ||||| ||||||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  21569306 ttaaacgtttcaatttggtcatttatctttgttttcatcatctatttaatcatattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 21569404  T
Q  266 gaggtccatcagatctaaaagtgtatcac 294  Q
    |||||||||||||||||| ||||||||||    
T  21569405 gaggtccatcagatctaacagtgtatcac 21569433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 21570483 - 21570355
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||  || |||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  21570483 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttgatcctattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 21570385  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||| |||||||||||  ||||||||||    
T  21570384 gaggtctatcagatctaatcgtgtatcacc 21570355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 31205769 - 31205641
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||||||||||| ||||||| || ||||| |||||||||||||||||| ||||  ||   |||||| ||  |||||| ||||    
T  31205769 ttaaacgtttcaaaatggtcctttatctttgttttaattattaatttggtcatattttattaattttaaactccttaaaaagaagacatttggat-aaag 31205671  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    ||| ||||||||||||||  ||||||||||    
T  31205670 gagatccatcagatctaacggtgtatcacc 31205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 54823318 - 54823253
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||    
T  54823318 ttaaacgttttaaaatggtcctttatctttgttttagtcatcaatttgatcatattttattaattt 54823253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 44219080 - 44219014
Alignment:
Q  175 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctct 241  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||| |||| ||||||||    
T  44219080 tttaaattggtcctttatctttgtttttatcatcaatttggtcctattttattgattttaaacctct 44219014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 54822437 - 54822499
Alignment:
Q  170 aacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||  || ||||||||||||||    
T  54822437 aacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatcctattttattaattt 54822499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 44217629 - 44217690
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttatta 228  Q
    |||||||||||||  ||||| ||||||||| |||| ||||||||||| ||| ||||||||||    
T  44217629 ttaaacgttttaatttggtcttttatctttgttttcatcatcaatttggtcctattttatta 44217690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 47573704 - 47573608
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 263  Q
    |||||||||||||  |||||||| |||||| ||||  ||||| |||| |||||||||||||||||| ||| ||||   |||||| |||||||||||||    
T  47573704 ttaaacgttttaatttggtcctt-atctttgtttttgtcatcgatttggtcatattttattaattttaaatctctgaaaaagaagaccgttggataaa 47573608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 42698721 - 42698650
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacc 238  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||||||  |||||||| |||| |||||    
T  42698721 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttagtcccattttatttattttaaacc 42698650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 38593087 - 38593241
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||||||      
T  38593087 ttaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagaccgttggataaa-- 38593184  T
Q  266 gaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttca 316  Q
    ||| |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  38593185 gagatccatcagatctaatagtgtatcaccaacacttaatttatatcactttcttca 38593241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 38596683 - 38596837
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||||||      
T  38596683 ttaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagaccgttggataaa-- 38596780  T
Q  266 gaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttca 316  Q
    ||| |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  38596781 gagatccatcagatctaatagtgtatcaccaacacttaatttatatcactttcttca 38596837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 10330762 - 10330888
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| ||||| ||   |||||| ||  |||||||||      
T  10330762 ttaaacgtttcaaaatggtcatttatctttgttttagccattaatttggtcctattttattaattttaaaccccttaaaaagaagactattggataaa-- 10330859  T
Q  266 gaggtccatcagatctaaaagtgtatcac 294  Q
    |||||| ||||||||||| ||||||||||    
T  10330860 gaggtctatcagatctaacagtgtatcac 10330888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 372027 - 371900
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 265  Q
    |||||||||| ||  || |||||||||||| |||| |||||||||||  || |||||||||||||| ||||||||   |||||  || ||||||| ||||    
T  372027 ttaaacgtttcaatttgatcctttatctttgttttcatcatcaatttgatcctattttattaattttaaacctctcaaaaagatgactgttggat-aaag 371929  T
Q  266 gaggtccatcagatctaaaagtgtatcac 294  Q
    ||||| ||||||||||||  |||||||||    
T  371928 gaggttcatcagatctaacggtgtatcac 371900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 38594107 - 38593956
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||||||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| |||| | |   |||||| |  ||||||| ||||    
T  38594107 ttaaacgttttaaaatggtcatttatctttattttagacataaatttggtcctattttattaattttaaacttatcaaaaagaagattgttggat-aaag 38594009  T
Q  266 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 316  Q
    ||||||||||||||||    ||||||      |||||||||||||||||||||||||    
T  38594008 gaggtccatcagatct----gtgtatcaccaacacctaatttatatcactttcttca 38593956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 38597703 - 38597552
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||||||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| |||| | |   |||||| |  ||||||| ||||    
T  38597703 ttaaacgttttaaaatggtcatttatctttattttagacataaatttggtcctattttattaattttaaacttatcaaaaagaagattgttggat-aaag 38597605  T
Q  266 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 316  Q
    ||||||||||||||||    ||||||      |||||||||||||||||||||||||    
T  38597604 gaggtccatcagatct----gtgtatcaccaacacctaatttatatcactttcttca 38597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 370831 - 370951
Alignment:
Q  175 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtcca 273  Q
    |||||| ||||| ||||||||| |||| |||||||||||  || ||||||||| |||| |||||||||  ||| || |||||||||| ||| |||||| |    
T  370831 tttaaattggtcatttatctttgtttttatcatcaatttgatcctattttattgattttaaacctctaaaaaataagaccgttggat-aaatgaggtcta 370929  T
Q  274 tcagatctaaaagtgtatcacc 295  Q
    ||| ||||||  ||||||||||    
T  370930 tcaaatctaatggtgtatcacc 370951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 50002469 - 50002597
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    ||||||||||  |||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||  || | |||||| | |||||||| ||||    
T  50002469 ttaaacgtttcgaaatggtcctttatgtttgttttaatcatcaatttagtcctattttattaattttaaactccttcaaaagaagatcgttggat-aaag 50002567  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    ||| ||||||||||||||  ||||||||||    
T  50002568 gagatccatcagatctaacggtgtatcacc 50002597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 50003283 - 50003155
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||| ||||  ||   ||| || |||||||||| ||||    
T  50003283 ttaaacgtttcaaaatggtcctttatgtttgttttaatcatcaatttggtcctattttattaattttaaactccttaaaaataagaccgttggat-aaag 50003185  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||| |||||||||||  ||||||||||    
T  50003184 gaggtcaatcagatctaacggtgtatcacc 50003155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 21248317 - 21248189
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||| |||||||||||||| ||||||||   |||||| || |||||||  |||    
T  21248317 ttaaacgtttcaaaatggtcccttatctttgttttagtcattattttggtcctattttattaattttaaacctcttaaaaagaagactgttggat-taag 21248219  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||||||| |||||||  ||||||||||    
T  21248218 gaggtccatcggatctaacggtgtatcacc 21248189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 27225490 - 27225617
Alignment:
Q  168 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 266  Q
    ||||||||| ||  |||| |||||| ||| ||||  |||||||||||||| |||||||||||||| |||||| |   |||||| |||||||||| ||||     
T  27225490 taaacgtttcaatttggttctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaacctttcaaaaagaagaccgttggat-aaaga 27225588  T
Q  267 aggtccatcagatctaaaagtgtatcacc 295  Q
    | |||||||||||||||| ||||||||||    
T  27225589 aagtccatcagatctaaaggtgtatcacc 27225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 5409400 - 5409521
Alignment:
Q  173 gttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtc 271  Q
    |||||||  ||||||||||||||| |||| |||||||||||  ||  ||||||||||||| ||||||||   |||||| |||||||||| |||||||||     
T  5409400 gttttaatttggtcctttatctttgttttcatcatcaatttgatccaattttattaattttaaacctcttaaaaagaagaccgttggat-aaaggaggtt 5409498  T
Q  272 catcagatctaaaagtgtatcac 294  Q
    |||||||| |||  |||||||||    
T  5409499 catcagatttaacggtgtatcac 5409521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 288
Target Start/End: Complemental strand, 27226598 - 27226478
Alignment:
Q  168 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 266  Q
    ||||||||| ||  ||||||||||| ||| |||| ||||||||||| ||| |||||||||||||| ||||| ||   |||||| | |||||||| |||||    
T  27226598 taaacgtttcaatttggtcctttatgtttgttttcatcatcaatttggtcctattttattaattttaaacccctcaaaaagaagatcgttggat-aaagg 27226500  T
Q  267 aggtccatcagatctaaaagtg 288  Q
    |||||||| |||||||| ||||    
T  27226499 aggtccataagatctaacagtg 27226478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 55387706 - 55387641
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 232  Q
    ||||||||||||| ||| || ||||||||| |||||||||||||||| ||||||||||||| ||||    
T  55387706 ttaaacgttttaagatgatcttttatctttgttttaatcatcaatttggtcatattttattgattt 55387641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 45730714 - 45730820
Alignment:
Q  189 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtccatcagatctaaaagt 287  Q
    |||||||| |||| |||||| |||||||| |||||||||||||| ||| |  ||  |||||| |||||||||| |||||| || ||||| ||||||  ||    
T  45730714 ttatctttgttttcatcatcgatttagtcctattttattaatttgaaatccataaaaaagaagaccgttggat-aaaggaagttcatcatatctaaccgt 45730812  T
Q  288 gtatcacc 295  Q
    ||||||||    
T  45730813 gtatcacc 45730820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 5384479 - 5384604
Alignment:
Q  169 aaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagga 267  Q
    |||||||| ||  ||||||| ||||||| |||| | ||||||||| |||  ||||||||||||| ||||||||   |||||| ||||| |||| ||| ||    
T  5384479 aaacgtttcaatttggtcctctatctttgttttcaacatcaatttggtccaattttattaattttaaacctcttaaaaagaagaccgtgggat-aaatga 5384577  T
Q  268 ggtccatcagatctaaaagtgtatcac 294  Q
    ||| |||||||| |||  |||||||||    
T  5384578 ggttcatcagatttaacggtgtatcac 5384604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 21247292 - 21247362
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 237  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||  |||||||||||||| ||||    
T  21247292 ttaaacgtttcaaaatggtcccttatctttgttttagtcataattttggttctattttattaattttaaac 21247362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 23153690 - 23153563
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||   |||||| || ||||||| ||||    
T  23153690 ttaaacgtttcaatttggtcatttatctttgtttttatcatcaatttaatcatattttattaattttaaacctctcaaaaagaagactgttggat-aaag 23153592  T
Q  266 gaggtccatcagatctaaaagtgtatcac 294  Q
    ||||||||||||||||||  |||||||||    
T  23153591 gaggtccatcagatctaacggtgtatcac 23153563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 35044675 - 35044804
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtca-tattttattaatttcaaacctctacgaaagaa-accgttggataaaa 264  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| |||| | |||||||||||| |||   ||   |||||| |||||||||| |||    
T  35044675 ttaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttggtcatttttttattaattttaaaatccttaaaaagaagaccgttggat-aaa 35044773  T
Q  265 ggaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||||||| |||||||| |||||||||||    
T  35044774 ggaggtccattagatctaagagtgtatcacc 35044804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 36584965 - 36584837
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||| | ||   || ||| |||||||||| ||||    
T  36584965 ttaaacatttcaaaatggtcctttatctttattttagtcatcaatttggtcatattttattaattttaaagcccttaaaacgaagaccgttggat-aaag 36584867  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    ||||||||| | |||||| |||| ||||||    
T  36584866 gaggtccattatatctaagagtggatcacc 36584837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 47536902 - 47536782
Alignment:
Q  175 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtcca 273  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||| |||| |||| |||   |||||| |||||||||||||| |||||| |    
T  47536902 tttaaattggtcctttatctttgtttttatcatcaatttggtcctattttattgattttaaacttctcaaaaagaagaccgttggataaaa-gaggtcta 47536804  T
Q  274 tcagatctaaaagtgtatcacc 295  Q
    ||||||||||  ||||||||||    
T  47536803 tcagatctaatggtgtatcacc 47536782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 47535715 - 47535842
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 265  Q
    |||||||||| ||  ||||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||   |||||  || ||||||| ||||    
T  47535715 ttaaacgtttcaatttggtcctttatctttgtttttatcatcaatttggtcctattttattaattttaaacctctcaaaaagatgactgttggat-aaag 47535813  T
Q  266 gaggtccatcagatctaaaagtgtatcac 294  Q
    ||| ||||||||||||||  |||||||||    
T  47535814 gagatccatcagatctaacggtgtatcac 47535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 43704512 - 43704398
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||||||||||| ||||| |||||| |||| || |||||||||||||| ||||| ||   |||||| |||||||||| ||||    
T  43704512 ttaaacgtttcaaaatggtcctttatctttgttttagtcatcattttaatcctattttattaattttaaaccccttaaaaagaagaccgttggat-aaag 43704414  T
Q  266 gaggtccatcagatct 281  Q
    ||| |||||| |||||    
T  43704413 gagatccatcggatct 43704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 35045954 - 35045838
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||  || |||||||||||||| ||||  ||   |||||| |||||||||| ||||    
T  35045954 ttaaacgtttcaaaatggtcatttatctttgttttaatcatcaatttgatcctattttattaattttaaactccttaaaaagaataccgttggat-aaag 35045856  T
Q  266 gaggtccatcagatctaa 283  Q
    ||| |||||| |||||||    
T  35045855 gagatccatcggatctaa 35045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 40321125 - 40321253
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| | | | |||||||||||| |||    |   |||||| |||||||||| ||||    
T  40321125 ttaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttgggccttttttattaattttaaaatcattaaaaagaagaccgttggat-aaag 40321223  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    ||||||||| |||||||| |||||||||||    
T  40321224 gaggtccattagatctaacagtgtatcacc 40321253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 295
Target Start/End: Original strand, 42520289 - 42520405
Alignment:
Q  179 aaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaag-aaaccgttggataaaaggaggtccatcag 277  Q
    |||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||| |||||  |   |||| | |||||||||| |||||||||| |||||    
T  42520289 aaatggtcctgtatctttgttttagtcatcaattttgtcatattttatcaattttaaacccattaaaaagtagaccgttggat-aaaggaggtctatcag 42520387  T
Q  278 atctaaaagtgtatcacc 295  Q
    ||||||  ||||||||||    
T  42520388 atctaacggtgtatcacc 42520405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 42521318 - 42521190
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| ||||||||||| || |||| ||||| |||||||||| ||| |||||||| ||||| |||   ||   ||| || |||||||||| ||||    
T  42521318 ttaaacgtttcaaaatggtcctctacctttgttttagtcatcaatttggtcctattttatcaattttaaaatccttaaaaataagaccgttggat-aaag 42521220  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||||||| ||||||| |||||||||||    
T  42521219 gaggtccatcggatctaacagtgtatcacc 42521190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 40322295 - 40322225
Alignment:
Q  168 taaacgtttt-aaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 237  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||  || |||||||||||||| ||||    
T  40322295 taaacgttttcaaaatggtcttttatctttgttttaatcatcaatttgatcctattttattaattttaaac 40322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 43703109 - 43703237
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    ||||| |||||||||||||| ||||||| |  ||| ||||||||||| ||  |||||||||||||| |||  |||   |||||| |||||||||| ||||    
T  43703109 ttaaatgttttaaaatggtcttttatctatgctttcatcatcaatttggtactattttattaattttaaatttcttaaaaagaagaccgttggat-aaag 43703207  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    ||||| |||| |||||||  ||||||||||    
T  43703208 gaggtgcatcggatctaacggtgtatcacc 43703237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 40881168 - 40881245
Alignment:
Q  189 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||| ||||  |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||||    
T  40881168 ttatctttatttttgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaaag 40881245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 41767224 - 41767096
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||| |||||||||||||| ||||||||   |||||| || |||||||  |||    
T  41767224 ttaaacgtttcaaaatggtcccttatctttattttagtcattattttggtcctattttattaattttaaacctcttaaaaagaagactgttggat-taag 41767126  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    |||||||||| |||||||  ||||||||||    
T  41767125 gaggtccatcggatctaacggtgtatcacc 41767096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 44770674 - 44770550
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    ||||| ||||||||||||||||||| |||| ||||| ||||||||||  || |||||||||||||| ||||| ||   |||||| |||||||||| |||     
T  44770674 ttaaatgttttaaaatggtcctttagctttgttttagtcatcaatttgatcctattttattaattttaaaccccttaaaaagaagaccgttggat-aaat 44770576  T
Q  266 gaggtccatcagatctaaaagtgtat 291  Q
    |||||| ||| ||||||| |||||||    
T  44770575 gaggtctatcggatctaacagtgtat 44770550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 43416028 - 43415957
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacc 238  Q
    |||||||||| ||||||||| ||||||||| ||||| |||||| |||||||  ||||||||||||| |||||    
T  43416028 ttaaacgtttcaaaatggtcttttatctttgttttagtcatcattttagtccgattttattaattttaaacc 43415957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 44769749 - 44769862
Alignment:
Q  181 atggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtccatcagat 279  Q
    |||||| ||||||||| ||||| ||||||||||  ||||||||||||||||| ||| | ||   || ||| || |||||||  |||||||||||||| ||    
T  44769749 atggtcatttatctttgttttagtcatcaatttgatcatattttattaattttaaaacccttaaaatgaagactgttggat--aaggaggtccatcatat 44769846  T
Q  280 ctaaaagtgtatcacc 295  Q
    |||| |||||||||||    
T  44769847 ctaacagtgtatcacc 44769862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 12820158 - 12820031
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||||||||  |||||||| |||||| ||||  || || |||| ||| |||||||||||||| ||| ||||   |||||| |||||||||| ||||    
T  12820158 ttaaacgttttaatttggtcctt-atctttgttttcgtcgtcgatttggtcctattttattaattttaaatctctcaaaaagaagaccgttggat-aaag 12820061  T
Q  266 gaggtccatcagatctaaaagtgtatcacc 295  Q
    ||||| ||||| ||||||  ||||||||||    
T  12820060 gaggttcatcatatctaactgtgtatcacc 12820031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 43414437 - 43414498
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttatta 228  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||| ||  ||||||||||    
T  43414437 ttaaacgtttcaaaatggtcctttatctatgttttcatcatcaatttggtactattttatta 43414498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 23768545 - 23768471
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctcta 242  Q
    ||||| |||||||| |||||||| |||||| ||||  |||||||||| ||| |||||||||||||| ||| |||||    
T  23768545 ttaaatgttttaaattggtcctt-atctttgttttcgtcatcaatttggtcctattttattaattttaaatctcta 23768471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 9189450 - 9189546
Alignment:
Q  167 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 263  Q
    |||||||||| ||  |||||||| |||||| |||   |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||    
T  9189450 ttaaacgtttcaatttggtcctt-atctttgtttctgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaa 9189546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 32157 - 32285
Alignment:
Q  166 gttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaa 264  Q
    ||||||||||||||| ||||  ||||||||| |||||  ||||||||| ||| |||||||||||||| ||||| ||  ||||||| ||  |||||||||     
T  32157 gttaaacgttttaaattggttatttatctttgttttagccatcaatttggtcctattttattaattttaaaccccttagaaagaagactattggataaa- 32255  T
Q  265 ggaggtccatcagatctaaaagtgtatcacc 295  Q
     |||| ||||||||||||| | |||||||||    
T  32256 -gaggcccatcagatctaacaatgtatcacc 32285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 27886 - 28016
Alignment:
Q  166 gttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaaacc---gttggataa 262  Q
    ||||||||||| ||||||||| ||||||||| |||||  |||||| || ||| |||||||||||||| ||| | ||   ||||||  |    ||||||||    
T  27886 gttaaacgtttcaaaatggtcatttatctttgttttagccatcaagttggtcctattttattaattttaaatcccttaaaaagaagactattttggataa 27985  T
Q  263 aaggaggtccatcagatctaaaagtgtatcacc 295  Q
    |  ||||||||||||||||||||||||||||||    
T  27986 a--gaggtccatcagatctaaaagtgtatcacc 28016  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 85115 - 85038
Alignment:
Q  189 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 265  Q
    |||||||| ||||  |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||||    
T  85115 ttatctttatttttgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaaag 85038  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 48182 - 48147
Alignment:
Q  376 acacctccaatttcttaaatccagaaatcatcaaca 411  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48182 acacctccaatttcttaaatccagaaatcgtcaaca 48147  T

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