View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_low_30 (Length: 241)

Name: NF7971_low_30
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_low_30
NF7971_low_30
[»] chr3 (5 HSPs)
chr3 (117-220)||(9102588-9102691)
chr3 (74-139)||(35409994-35410058)
chr3 (76-139)||(16473946-16474009)
chr3 (77-123)||(19545768-19545814)
chr3 (83-139)||(15997499-15997555)
[»] chr5 (5 HSPs)
chr5 (115-220)||(42639878-42639982)
chr5 (80-144)||(42859574-42859638)
chr5 (75-113)||(43065370-43065408)
chr5 (117-174)||(37999731-37999788)
chr5 (113-176)||(30908960-30909023)
[»] chr2 (6 HSPs)
chr2 (116-220)||(40730655-40730759)
chr2 (75-135)||(19710390-19710450)
chr2 (74-136)||(16132414-16132476)
chr2 (74-139)||(27979250-27979315)
chr2 (74-139)||(28065779-28065844)
chr2 (77-138)||(28502822-28502884)
[»] chr7 (3 HSPs)
chr7 (115-193)||(1818889-1818967)
chr7 (76-149)||(12197517-12197589)
chr7 (77-121)||(10531046-10531091)
[»] chr4 (3 HSPs)
chr4 (76-139)||(49496850-49496913)
chr4 (92-139)||(41947466-41947513)
chr4 (77-121)||(3294769-3294814)
[»] scaffold0657 (1 HSPs)
scaffold0657 (76-139)||(5534-5597)
[»] chr6 (4 HSPs)
chr6 (76-139)||(25003812-25003875)
chr6 (76-139)||(34635176-34635239)
chr6 (80-135)||(16110252-16110307)
chr6 (117-175)||(32452052-32452110)
[»] chr8 (1 HSPs)
chr8 (73-139)||(21233073-21233139)
[»] chr1 (2 HSPs)
chr1 (74-135)||(24274815-24274875)
chr1 (76-123)||(37668649-37668695)
[»] scaffold0807 (1 HSPs)
scaffold0807 (80-139)||(1191-1250)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 9102588 - 9102691
Alignment:
Q  117 tgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaatttagagttcaataatttattatatgtgtaaagaatataagaaaa 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9102588 tgtaacaccccaatattttatacctgttcttttctataattttctcaatttgtaatttagagttcaataatttattatatgtgtaaagaatttaagaaaa 9102687  T
Q  217 acct 220  Q
    ||||    
T  9102688 acct 9102691  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 35409994 - 35410058
Alignment:
Q  74 actttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  35409994 actttctagtttcgaggacgaaactattttaagggg-taataatgtaacgccccaatattttatat 35410058  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 16473946 - 16474009
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||    
T  16473946 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatat 16474009  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 19545814 - 19545768
Alignment:
Q  77 ttctagtttcgaggacgaaactattttaaggggataataatgtaaca 123  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  19545814 ttctagtttcgaggacgaaactattttaaagggataataatgtaaca 19545768  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 15997555 - 15997499
Alignment:
Q  83 tttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||| ||  ||||||||||| ||| ||||||||||||    
T  15997555 tttcgaggacgaaactattttaagaggggaataatgtaacgccctaatattttatat 15997499  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 42639878 - 42639982
Alignment:
Q  115 aatgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaatttagagttcaataatttattatatgtgtaaagaatataagaa 214  Q
    ||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  42639878 aatgtaacaccccaa-attttatacatgttcttttctataattatctcaatttgtaatttagtgttcaataatttattatatgtgtaaagaatttaagaa 42639976  T
Q  215 aaacct 220  Q
    ||||||    
T  42639977 aaacct 42639982  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 42859574 - 42859638
Alignment:
Q  80 tagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatatctgtt 144  Q
    |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  42859574 tagttttgaggacgaaactattttaagggggtaataatgtaacgccccaatattttatatatgtt 42859638  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 43065408 - 43065370
Alignment:
Q  75 ctttctagtttcgaggacgaaactattttaaggggataa 113  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  43065408 ctttctagtttcgaggacgaaactattttaaagggataa 43065370  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 37999731 - 37999788
Alignment:
Q  117 tgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaattt 174  Q
    ||||||| ||||||||||||||  |||||||||  |||||||||||||||||| ||||    
T  37999731 tgtaacatcccaatattttatacatgttcttttgaataattttctcaatttgtcattt 37999788  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 30908960 - 30909023
Alignment:
Q  113 ataatgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaatttag 176  Q
    ||||| ||||| ||||||||||||||| |||||||||  ||| |||||||||||| | ||||||    
T  30908960 ataatataacatcccaatattttatatatgttcttttgaatagttttctcaatttatcatttag 30909023  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 40730759 - 40730655
Alignment:
Q  116 atgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaatttagagttcaataatttattatatgtgtaaagaatataagaaa 215  Q
    |||||||||||||||| ||||||  ||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||  |||||||| |||||||    
T  40730759 atgtaacaccccaatactttatacttgttcttttatagaattttctcaatttgtaatttagtgttaaataatttattatatgcataaagaatttaagaaa 40730660  T
Q  216 aacct 220  Q
    |||||    
T  40730659 aacct 40730655  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 19710450 - 19710390
Alignment:
Q  75 ctttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatatttt 135  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19710450 ctttctagtttcgaggacgaaactattttaagggggtaataatgtaacaccccaatatttt 19710390  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 16132476 - 16132414
Alignment:
Q  74 actttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatatttta 136  Q
    |||||||||| | |||||||||||||||||||| || |||||||||||| |||||||||||||    
T  16132476 actttctagtattgaggacgaaactattttaagagggtaataatgtaacgccccaatatttta 16132414  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 27979315 - 27979250
Alignment:
Q  74 actttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    ||||| |||||||||||||| || |||||||||| ||||||| ||||||||||  |||||||||||    
T  27979315 actttgtagtttcgaggacgtaattattttaaggagataatattgtaacaccctcatattttatat 27979250  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 28065844 - 28065779
Alignment:
Q  74 actttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    ||||| |||||||||||||| || |||||||||| ||||||| ||||||||||  |||||||||||    
T  28065844 actttgtagtttcgaggacgtaattattttaaggagataatattgtaacaccctcatattttatat 28065779  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 28502884 - 28502822
Alignment:
Q  77 ttctagtttcgaggacgaaactatttt-aaggggataataatgtaacaccccaatattttata 138  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||| | | ||||||||||    
T  28502884 ttctagtttcgaggatgaaactatttttaagggggtaataatgtaacatctcgatattttata 28502822  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 1818967 - 1818889
Alignment:
Q  115 aatgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaatttagagttcaataatttatta 193  Q
    ||||||||||||||||| ||||||  ||||||||| || ||||||||||||||||||||||| ||||||||||||||||    
T  1818967 aatgtaacaccccaatactttatacttgttcttttatagaattttctcaatttgtaatttagtgttcaataatttatta 1818889  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 12197589 - 12197517
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatatctgttctttt 149  Q
    ||||||||||||  || ||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||    
T  12197589 tttctagtttcggagaagaaactattttaagggg-taataatgtaacgccccaatattttatatatgttttttt 12197517  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 10531091 - 10531046
Alignment:
Q  77 ttctagtttcgaggacgaaacta-ttttaaggggataataatgtaa 121  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||    
T  10531091 ttctagtttcgaggacgaaacaatttttaagggggtaataatgtaa 10531046  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 49496850 - 49496913
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  49496850 tttctagtttcgaggacgaaactattttaagggggtaataatgtaacatcccgatattttatat 49496913  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 41947513 - 41947466
Alignment:
Q  92 cgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||  |||||||||||| | ||||||||||||||    
T  41947513 cgaaactattttaagggagtaataatgtaacgctccaatattttatat 41947466  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 3294769 - 3294814
Alignment:
Q  77 ttctagtttcgaggacgaaactatt-ttaaggggataataatgtaa 121  Q
    ||||||||||||||||||||| ||| |||||||| |||||||||||    
T  3294769 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 3294814  T

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Target: scaffold0657 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 5597 - 5534
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||    
T  5597 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatat 5534  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 25003812 - 25003875
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||    
T  25003812 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatat 25003875  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 34635176 - 34635239
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||    
T  34635176 tttctagtttcgaggacgaaactattttaagggggtaagaatgtaacatcccgatattttatat 34635239  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 16110307 - 16110252
Alignment:
Q  80 tagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatatttt 135  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  16110307 tagtttagaggacgaaactattttaaggggataataatgtaacgccctaatatttt 16110252  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 32452110 - 32452052
Alignment:
Q  117 tgtaacaccccaatattttatatctgttcttttctataattttctcaatttgtaattta 175  Q
    ||||||| ||||||||||||||  |||||||||  |||||||||| ||||||| |||||    
T  32452110 tgtaacatcccaatattttatacatgttcttttgaataattttcttaatttgtcattta 32452052  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 21233139 - 21233073
Alignment:
Q  73 cactttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    ||||||||| ||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||    
T  21233139 cactttctaattttgaggacgaaactattttaagtgggtaataatgtaacatcccaatattttatat 21233073  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 24274815 - 24274875
Alignment:
Q  74 actttctagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatatttt 135  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||    
T  24274815 actttctagtttcgaggacgaaactattttaagggggtaataatgtaac-gcccaatatttt 24274875  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 37668695 - 37668649
Alignment:
Q  76 tttctagtttcgaggacgaaactattttaaggggataataatgtaaca 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37668695 tttctagtttcgaggacgaaactattttaagggg-taataatgtaaca 37668649  T

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Target: scaffold0807 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 1250 - 1191
Alignment:
Q  80 tagtttcgaggacgaaactattttaaggggataataatgtaacaccccaatattttatat 139  Q
    ||||||||||||||||||| |||||||||| ||||||||||||  ||||| |||||||||    
T  1250 tagtttcgaggacgaaactgttttaagggggtaataatgtaacgacccaaaattttatat 1191  T

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