View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_31 (Length: 240)
Name: NF7971_low_31
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 31667518 - 31667309
Alignment:
| Q |
18 |
actataactatattcttataattttgaggactaaaacagctacaggttgtactctaaattaatattttgtaatttgaaagcgctaacgccttgtattttt |
117 |
Q |
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| T |
31667518 |
actataactatattcttataattttgaggactaaaacagctataggttgtactctaaattaatattttgtaatttgaaagcgctaacaccttgtattttt |
31667419 |
T |
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| Q |
118 |
agtaaagcaaaacaatctttcgtgctaggcgctctctcgcacttgctctcctggtcgactagattgaatcgatacaatgaagataacagatgagagagta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31667418 |
agtaaagcaaaacaatctttcgtgctaggcgctctctcgcactcgctctcctgatcgaccagatttaatcgatacaatgaagataacagatgagagagta |
31667319 |
T |
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| Q |
218 |
atcttaagta |
227 |
Q |
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|||||||||| |
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| T |
31667318 |
atcttaagta |
31667309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 31684575 - 31684390
Alignment:
| Q |
39 |
ttttgaggactaaaacagctacaggttgtactctaaattaatattttgtaatttgaaagcgctaacgccttgtatttttagtaaagcaaaacaatctttc |
138 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31684575 |
ttttgaggattaaaacagctataggttgtactctaaattaatattttgtaatttgaaagcgctaacgccttgtatttttag---agcaaaacaatctttc |
31684479 |
T |
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| Q |
139 |
gtgctaggcgctctctcgcacttgctctcctggtcgactagattgaatcgatacaatgaagataacagatgagagagtaatcttaagta |
227 |
Q |
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|||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31684478 |
gtgctaggcgctctctcgcactcgctctcctgatcgaccagattgaatcaatacaatgaagataacagatgagagagtaatcttaagta |
31684390 |
T |
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