View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_35 (Length: 231)
Name: NF7971_low_35
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 35926636 - 35926452
Alignment:
| Q |
13 |
atgaagagtataaagtacgtgttaatgctatggtagctaaggcccagaaaacaccagaagaaggatggacgatgcaagatggaacaccttggcctggcaa |
112 |
Q |
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| T |
35926636 |
atgaagagtataaagtacgtgttaatgctatggtagctaaggcccagaaaacaccagaagaaggatggacgatgcaagatggaacaccttggcctggcaa |
35926537 |
T |
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| Q |
113 |
taactcacgtgatcaccctggaatgattcaggtatgtccattatttctgtatgcaatcaattctcaaagctaaattgttggtcat |
197 |
Q |
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| T |
35926536 |
taactcacgtgatcaccctggaatgattcaggtatgtccattatttctgtatgcaatcaattctcaaagctaaattgttgatcat |
35926452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 5351580 - 5351619
Alignment:
| Q |
192 |
ggtcatcaagaagataaacatcagcatcattgtagactgc |
231 |
Q |
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| T |
5351580 |
ggtcatcaagaagatatacatcagcatcattgtagactgc |
5351619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 5282684 - 5282721
Alignment:
| Q |
194 |
tcatcaagaagataaacatcagcatcattgtagactgc |
231 |
Q |
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| T |
5282684 |
tcatcaaggagataaatatcagcatcattgtagactgc |
5282721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 14949434 - 14949471
Alignment:
| Q |
194 |
tcatcaagaagataaacatcagcatcattgtagactgc |
231 |
Q |
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| T |
14949434 |
tcatcaagaagatagatatcagcatcattgtagactgc |
14949471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 15125941 - 15125904
Alignment:
| Q |
194 |
tcatcaagaagataaacatcagcatcattgtagactgc |
231 |
Q |
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| T |
15125941 |
tcatcaagaagatagatatcagcatcattgtagactgc |
15125904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 5128437 - 5128271
Alignment:
| Q |
13 |
atgaagagtataaagtacgtgttaatgctatggtagctaaggcccagaaaacaccagaagaaggatggacgatgcaagatggaacaccttggcctggcaa |
112 |
Q |
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|||||||||||||||| | ||||||||| |||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||| || || |
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| T |
5128437 |
atgaagagtataaagtcagagttaatgctttggttgctaaggctcagaaaacaccagatgaagggtggactatgcaagatggaacctcttggccaggaaa |
5128338 |
T |
|
| Q |
113 |
taactcacgtgatcaccctggaatgattcaggtatgtccattatttctgtatgcaatcaattctcaa |
179 |
Q |
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||| |||||||||||||| || ||||||||||||| |||||| || ||| || |||||| |||||| |
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| T |
5128337 |
taattcacgtgatcacccaggcatgattcaggtatatccattcattttgtttgaaatcaaatctcaa |
5128271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 49591874 - 49591793
Alignment:
| Q |
66 |
ccagaagaaggatggacgatgcaagatggaacaccttggcctggcaataactcacgtgatcaccctggaatgattcaggtat |
147 |
Q |
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| T |
49591874 |
ccagaggaaggttggacaatgcaggatggaactccttggcctggaaataatcccagggatcatcctggaatgattcaggtat |
49591793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 9478247 - 9478287
Alignment:
| Q |
69 |
gaagaaggatggacgatgcaagatggaacaccttggcctgg |
109 |
Q |
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| T |
9478247 |
gaagaaggatgggtgatgcaagatggtacaccttggcctgg |
9478287 |
T |
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