View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7971_low_4 (Length: 520)
Name: NF7971_low_4
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 2489481 - 2489971
Alignment:
| Q |
19 |
ataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489481 |
ataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattc |
2489580 |
T |
|
| Q |
119 |
acttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489581 |
acttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctgga |
2489680 |
T |
|
| Q |
219 |
acaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489681 |
acaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaag |
2489780 |
T |
|
| Q |
319 |
acgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489781 |
acgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaag |
2489880 |
T |
|
| Q |
419 |
agttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattctt |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2489881 |
agttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaatcagaggatcgtattctt |
2489971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 41591505 - 41591049
Alignment:
| Q |
19 |
ataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattc |
118 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| || ||||||||||| |||| || |||||||| || |||||||||||||| || || ||||| || |
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| T |
41591505 |
ataatgaatttgagaagcgaataaggcctgaagttataccagcaaatgagattgatgtcacattctctgatattggtgccttagaagaaacaaaagaatc |
41591406 |
T |
|
| Q |
119 |
acttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctgga |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||| | |||||||||||||||||||| |||||| |
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|
| T |
41591405 |
acttcaagaactagtaatgcttcctcttcgaaggccagaccttttcactggaggacttctaaaaccatgtcggggaatattgctatttgggcctcctgga |
41591306 |
T |
|
| Q |
219 |
acaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaag |
318 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41591305 |
actgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgtgtccatgtctaccatcacttctaaatggtttggtgaag |
41591206 |
T |
|
| Q |
319 |
acgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaag |
418 |
Q |
| |
|
| ||||||||||| || |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
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|
| T |
41591205 |
atgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtcgatgaggttgatagcatgcttgggcaacgaacaag |
41591106 |
T |
|
| Q |
419 |
agttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattggga |
475 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
41591105 |
agttggggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattggga |
41591049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 30 - 481
Target Start/End: Complemental strand, 11094893 - 11094442
Alignment:
| Q |
30 |
gagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattcacttcaagaac |
129 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| || || || |||||| | || || ||||| ||||| |||| ||||| || |||||||| | |
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|
| T |
11094893 |
gagaagcgaattagacctgaagttatccctgcaaatgagataggtgttacattcgcagatatcggtgcattagatgagataaaagaatcgcttcaagagc |
11094794 |
T |
|
| Q |
130 |
tagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaac |
229 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||| || ||||||||||| |||||||| ||||| || || || |||||||| || |||||||| |
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|
| T |
11094793 |
tagtaatgcttccccttagaagaccagaccttttcaaaggtggacttctaaagccatgtagaggtatattacttttcggtccacctggtaccggaaaaac |
11094694 |
T |
|
| Q |
230 |
aatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaat |
329 |
Q |
| |
|
|||||| |||||||| ||||| || || || ||||||||||||||||| || || ||||| || |||||||| |||||||| || ||||| || |||||| |
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|
| T |
11094693 |
aatgctagcaaaggcgattgcgaatgaagcaggagcaagtttcattaacgtctcgatgtccacgatcacttcaaaatggttcggagaagatgaaaagaat |
11094594 |
T |
|
| Q |
330 |
gtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaac |
429 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||||||| |||||||| ||||| || ||||| || ||||| || |||| |
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|
| T |
11094593 |
gtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagttgacagcatgctcggtcagcgtactagagtcggagaac |
11094494 |
T |
|
| Q |
430 |
atgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
481 |
Q |
| |
|
|||| |||||| |||| || || |||||||||||| | ||||||||||||| |
|
|
| T |
11094493 |
atgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 39697136 - 39697027
Alignment:
| Q |
192 |
ggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtcta |
291 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||||||||||||| |||||||| | |||| ||| |||||||||| ||||||||| | |||||||||| |
|
|
| T |
39697136 |
ggaatattgctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggtagcaaccgaagctggagcaaatttcattaacatctccatgtcta |
39697037 |
T |
|
| Q |
292 |
ccatcacttc |
301 |
Q |
| |
|
||| ||||| |
|
|
| T |
39697036 |
gcattacttc |
39697027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 44926625 - 44926730
Alignment:
| Q |
175 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
274 |
Q |
| |
|
|||| ||||| |||| ||| |||| || ||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44926625 |
ttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcat |
44926724 |
T |
|
| Q |
275 |
taatgt |
280 |
Q |
| |
|
||||| |
|
|
| T |
44926725 |
caatgt |
44926730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 44935065 - 44935170
Alignment:
| Q |
175 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
274 |
Q |
| |
|
|||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| || ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
44935065 |
ttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcat |
44935164 |
T |
|
| Q |
275 |
taatgt |
280 |
Q |
| |
|
||||| |
|
|
| T |
44935165 |
caatgt |
44935170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 45988450 - 45988556
Alignment:
| Q |
174 |
cttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttca |
273 |
Q |
| |
|
||||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| || || ||||||||||||||| |
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|
| T |
45988450 |
cttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttca |
45988549 |
T |
|
| Q |
274 |
ttaatgt |
280 |
Q |
| |
|
| ||||| |
|
|
| T |
45988550 |
tcaatgt |
45988556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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