View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_low_5 (Length: 501)

Name: NF7971_low_5
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_low_5
NF7971_low_5
[»] chr1 (5 HSPs)
chr1 (297-471)||(31070938-31071110)
chr1 (297-399)||(229445-229547)
chr1 (297-374)||(50525699-50525776)
chr1 (400-471)||(229077-229148)
chr1 (420-471)||(50525786-50525837)
[»] chr3 (11 HSPs)
chr3 (29-276)||(24634261-24634505)
chr3 (17-276)||(24656353-24656609)
chr3 (357-464)||(27405084-27405189)
chr3 (41-276)||(24672750-24672982)
chr3 (17-154)||(24679920-24680057)
chr3 (13-90)||(24687516-24687593)
chr3 (29-132)||(24676877-24676980)
chr3 (58-105)||(24693227-24693274)
chr3 (28-110)||(24684593-24684675)
chr3 (175-290)||(24677035-24677147)
chr3 (65-105)||(24641865-24641905)
[»] chr2 (1 HSPs)
chr2 (297-433)||(5590640-5590774)
[»] chr5 (2 HSPs)
chr5 (297-399)||(38919564-38919666)
chr5 (78-130)||(14722761-14722813)
[»] chr7 (1 HSPs)
chr7 (325-412)||(38130442-38130527)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 297 - 471
Target Start/End: Original strand, 31070938 - 31071110
Alignment:
Q  297 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 396  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  31070938 agagttgctatacggtacgacaagttaacatacgaatttgcacggcactttcaactaaaggtggtattctcttttaatgggtactaccttacaatattt- 31071036  T
Q  397 atataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct 471  Q
     |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  31071037 -tataataaaacataaacttggcgattatataaacgtttagagaagcaaaacagtgatatacattcttctttgct 31071110  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 229547 - 229445
Alignment:
Q  297 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 396  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229547 agagttgttatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 229448  T
Q  397 ata 399  Q
    |||    
T  229447 ata 229445  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 50525699 - 50525776
Alignment:
Q  297 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat 374  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50525699 agagttgctatacggtacgacaagttaaaacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat 50525776  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 229148 - 229077
Alignment:
Q  400 taataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  229148 taataaaacataaacttggctattatataaacgtctagagaagcaaaacagttatatacattcttctttgct 229077  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 50525786 - 50525837
Alignment:
Q  420 tattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50525786 tattatataaacgtctagagaagcaaaacagtgatatacattcttctttgct 50525837  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 24634261 - 24634505
Alignment:
Q  29 ttgaagatataccacttccaaaactctgggaggagaatccacaacagtgtctcacatccaactacaccagataagtggaatacgattttcgtagttagga 128  Q
    |||| ||||||||| ||||| ||||  ||||| |||||||| |  ||||||||||||||||  |||||||| |||||||||| |||  | |||||| | |    
T  24634261 ttgatgatataccaattccagaacttagggagtagaatccaaagaagtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttggta 24634360  T
Q  129 agctcatctcagccatggttgtaactgtgtggcaaaacaaagcagtcaaaaacatgaaaaatgttggggaggattgttggaaggggttgttagtgttaga 228  Q
    ||||||| ||||||||||||| |||||  || ||||| | || ||| ||||||| |||| |  ||||||| ||||||||||| |||||||||   || ||    
T  24634361 agctcatgtcagccatggttgcaactgcatgacaaaatacagaagtaaaaaacaggaaacaaattggggaagattgttggaaagggttgtta---tttga 24634457  T
Q  229 accttgatactttattccgactgaagccaactctaagctcataagaat 276  Q
    |||||||||| | ||||| | |||| ||||||| || ||||| |||||    
T  24634458 accttgatacataattccaattgaacccaactccaaactcatcagaat 24634505  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 24656353 - 24656609
Alignment:
Q  17 aaaaggaacatgttgaagatataccacttccaaaactctgggaggagaatccacaacagtgtctcacatccaactacaccagataagtggaatacgattt 116  Q
    |||||||| | ||||| ||||||||| ||||| || || ||||| |||||||| |  ||||||||||||||||  |||||||| ||||| |||| ||       
T  24656353 aaaaggaataagttgatgatataccaattccagaaatcagggagcagaatccaaagaagtgtctcacatccaataacaccagaaaagtgaaatatgaaca 24656452  T
Q  117 tcgtagttaggaagctcatctcagccatggttgtaactgtgtggcaaaacaaagcagtcaaaaacatgaaaaatgttggggaggattgttggaaggggtt 216  Q
    | ||||||||||||||||| ||||||||||||| |||||  || |||||   ||||||||||||||  || |    ||||||  ||||||||||||||||    
T  24656453 tagtagttaggaagctcatgtcagccatggttgcaactgcatgacaaaatctagcagtcaaaaacagcaacataagtggggataattgttggaaggggtt 24656552  T
Q  217 gttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataagaat 276  Q
    |   |||||  ||||||| ||||||| ||| | |||| ||||||||||| ||||||||||    
T  24656553 g---gtgtttaaaccttggtactttactccaattgaacccaactctaaggtcataagaat 24656609  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 464
Target Start/End: Original strand, 27405084 - 27405189
Alignment:
Q  357 gtggtattctcttttaatgggtactaccttacaatattttatataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatat 456  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||| ||| || ||||||||||| ||||||||  |||| ||||||     
T  27405084 gtggtattctcttttaatgggtgctaccttacaatattt--tataataaaacatcaacatggttaatatataaacgtttagagaaggcaaacggtgataa 27405181  T
Q  457 acattctt 464  Q
    ||||||||    
T  27405182 acattctt 27405189  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 24672750 - 24672982
Alignment:
Q  41 cacttccaaaactctgggaggagaatccacaacagtgtctcacatccaactacaccagataagtggaatacgattttcgtagttaggaagctcatctcag 140  Q
    |||||||| ||||| ||||| || ||||| |  ||||||||||||||||||| ||| || |||||||||| |||  | |||||| |  ||||||| ||||    
T  24672750 cacttccagaactcagggagaaggatccagagaagtgtctcacatccaactaaaccggaaaagtggaatatgatcatagtagttggcgagctcatgtcag 24672849  T
Q  141 ccatggttgtaactgtgtggcaaaacaaagcagtcaaaaacatgaaaaatgttggggaggattgttggaaggggttgttagtgttagaaccttgatactt 240  Q
    | ||||||| |||    || ||||| | |||||| |||||||  || |    || ||| ||||||||||||||||||   |||||  |||||||||||||    
T  24672850 cgatggttgcaacgacatgacaaaatagagcagttaaaaacagcaacataagtgaggatgattgttggaaggggttg---gtgtttaaaccttgatactt 24672946  T
Q  241 tattccgactgaagccaactctaagctcataagaat 276  Q
     ||||| | |||||| ||||||||| ||||||||||    
T  24672947 aattccaattgaagctaactctaaggtcataagaat 24672982  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 24679920 - 24680057
Alignment:
Q  17 aaaaggaacatgttgaagatataccacttccaaaactctgggaggagaatccacaacagtgtctcacatccaactacaccagataagtggaatacgattt 116  Q
    |||||||| | |||||  |||||||| ||||| || || ||||| |||||||| |  ||||||||||| ||||||| ||| || |||||||||| |||      
T  24679920 aaaaggaataagttgataatataccaattccagaattcagggagtagaatccaaagaagtgtctcacaaccaactaaaccggaaaagtggaatatgatca 24680019  T
Q  117 tcgtagttaggaagctcatctcagccatggttgtaact 154  Q
    | |||||| | |||||||| ||||||||||||| ||||    
T  24680020 tagtagttggcaagctcatgtcagccatggttgcaact 24680057  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 24687516 - 24687593
Alignment:
Q  13 catcaaaaggaacatgttgaagatataccacttccaaaactctgggaggagaatccacaacagtgtctcacatccaac 90  Q
    |||||||||||| ||||||| ||| ||||| |||||||| || || ||||||||||| || |||||||||||| ||||    
T  24687516 catcaaaaggaatatgttgatgatgtaccaattccaaaattcaggaaggagaatccataaaagtgtctcacatgcaac 24687593  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 24676877 - 24676980
Alignment:
Q  29 ttgaagatataccacttccaaaactctgggaggagaatccacaacagtgtctcacatccaactacaccagataagtggaatacgattttcgtagttagga 128  Q
    |||| ||||||||| ||||| || || ||||| |||||||| | ||| || ||||||||||| | |||||| ||||||||||  ||  | ||||||||||    
T  24676877 ttgatgatataccaattccagaagtcagggagtagaatccatagcagagtttcacatccaacaataccagaaaagtggaatattataatagtagttagga 24676976  T
Q  129 agct 132  Q
    ||||    
T  24676977 agct 24676980  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 24693227 - 24693274
Alignment:
Q  58 gaggagaatccacaacagtgtctcacatccaactacaccagataagtg 105  Q
    ||||| ||||||||| ||||||||||||||||| |||||||| |||||    
T  24693227 gaggataatccacaaaagtgtctcacatccaacaacaccagaaaagtg 24693274  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 24684593 - 24684675
Alignment:
Q  28 gttgaagatataccacttccaaaactctgggaggagaatccacaacagtgtctcacatccaactacaccagataagtggaata 110  Q
    ||||| |||| |||| ||||| |||||  ||||||||||||| |  |||||||||| |||||||| ||| || ||||||||||    
T  24684593 gttgatgatacaccaattccataactcatggaggagaatccaaagaagtgtctcacgtccaactaaaccggaaaagtggaata 24684675  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 24677035 - 24677147
Alignment:
Q  175 caaaaacatgaaaaatgttggggaggattgttggaaggggttgttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataaga 274  Q
    |||||||||||||||  ||||||| | ||||||||| ||||||   ||||| ||||||||| |||| || || |  ||||||||||| ||||| || |||    
T  24677035 caaaaacatgaaaaaaattggggaaggttgttggaatgggttg---gtgtttgaaccttgacacttaataccaatggaagccaactccaagctgatcaga 24677131  T
Q  275 atgaaataagctttat 290  Q
    ||   |||||||||||    
T  24677132 atagtataagctttat 24677147  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 24641865 - 24641905
Alignment:
Q  65 atccacaacagtgtctcacatccaactacaccagataagtg 105  Q
    |||||||| ||||||||||||||||| |||||||| |||||    
T  24641865 atccacaaaagtgtctcacatccaacaacaccagaaaagtg 24641905  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 433
Target Start/End: Complemental strand, 5590774 - 5590640
Alignment:
Q  297 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 396  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||   |||| |  | ||||||||||||||||||| || ||||||||||||||||     
T  5590774 agagttgctatacggtacgacaaatcaacacacgaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgctaccttacaatattt- 5590676  T
Q  397 atataataaaacataaacttggctattatataaacgt 433  Q
     ||||||||||||| | | ||| || |||||||||||    
T  5590675 -tataataaaacatcatcctggttaatatataaacgt 5590640  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 38919564 - 38919666
Alignment:
Q  297 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 396  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||   |||| |  | ||||||||||||||||||| ||  ||||||||||||||||    
T  38919564 agagttgctatacgatacgacaagtcaacacacaaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgttaccttacaatatttt 38919663  T
Q  397 ata 399  Q
    |||    
T  38919664 ata 38919666  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 14722813 - 14722761
Alignment:
Q  78 tctcacatccaactacaccagataagtggaatacgattttcgtagttaggaag 130  Q
    |||||||||||||  ||||||| ||||||||||||||| | |||||| |||||    
T  14722813 tctcacatccaacatcaccagaaaagtggaatacgattctagtagttgggaag 14722761  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 38130527 - 38130442
Alignment:
Q  325 cacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatattttatataataaaacataa 412  Q
    ||||||||||||||||| ||  ||||||| |  |||  |||||||||||||| | |||| ||| |||||||  |||||||||||||||    
T  38130527 cacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattataatattt--tataataaaacataa 38130442  T

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