View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_6 (Length: 473)
Name: NF7971_low_6
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 37027593 - 37027987
Alignment:
| Q |
16 |
atcaaatttaaaaaatcatatgctagcaaattaccttcattcttaaccattcttgataaaattctggcgactcttctatgttgcttacagcattctcatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027593 |
atcaaatttaaaaaatcatatgctagcaaattaccttcattcttaaccattcttgataaaattctggcgactcttctatgttgcttacagcattctcatc |
37027692 |
T |
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| Q |
116 |
acaaaagtacctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027693 |
acaaaagtacctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaag |
37027792 |
T |
|
| Q |
216 |
gtaagaggtgaacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgataacactgtattcactgtgattattg |
315 |
Q |
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| T |
37027793 |
gtaagaggtgaacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgacaacactgtattcactgtgattattg |
37027892 |
T |
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| Q |
316 |
gtggttctagcactggatctgctgttgtcacaaacaagtccaatgctggtagctcatgttccctataatgnnnnnnnnttgtaagcaccacaatt |
410 |
Q |
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| T |
37027893 |
gtggttctagccctggatctgccgttgtcacaaacaagtccaatgctggtagttcatgttccctataatgaaaaaaaattgtaagcaccacaatt |
37027987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 111 - 371
Target Start/End: Original strand, 37011598 - 37011858
Alignment:
| Q |
111 |
tcatcacaaaagtacctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcat |
210 |
Q |
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| T |
37011598 |
tcatcacagaaatatctaaatggtgctctacattgtacattgtacttcttacaaaatggtacccaaatttcagcaaatttggcagcttccacaagagcat |
37011697 |
T |
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| Q |
211 |
aaaaggtaagaggtgaacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgataacactgtattcactgtgat |
310 |
Q |
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| T |
37011698 |
agaaggtaagagttgaacacccatcatcagaaacataacaagctagcttattagcaggataatcaagtgccaacaatgataacactgtattcactgtgat |
37011797 |
T |
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| Q |
311 |
tattggtggttctagcactggatctgctgttgtcacaaacaagtccaatgctggtagctca |
371 |
Q |
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| T |
37011798 |
tattggtggttctagcactggatctgctgttgttacaaacatgtccaatgctggaagctca |
37011858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 126 - 357
Target Start/End: Original strand, 37045643 - 37045874
Alignment:
| Q |
126 |
ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaaggtaagaggtg |
225 |
Q |
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|||||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||||||||||||||| ||||||| ||| |||| ||||||| | | |
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| T |
37045643 |
ctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacag |
37045742 |
T |
|
| Q |
226 |
aacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgataacactgtattcactgtgattattggtggttctag |
325 |
Q |
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| T |
37045743 |
aacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaag |
37045842 |
T |
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| Q |
326 |
cactggatctgctgttgtcacaaacaagtcca |
357 |
Q |
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| T |
37045843 |
tacaggatctgctgttgtcacaaacaaatcca |
37045874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 126 - 357
Target Start/End: Original strand, 37036303 - 37036534
Alignment:
| Q |
126 |
ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaaggtaagaggtg |
225 |
Q |
| |
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|||||||||||||||||||| | ||| || |||||||| ||||||||||||| ||| ||||||||||| ||||||| ||| |||| ||||||| | | |
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| T |
37036303 |
ctaaaaggtgctctaacttgtatattatacttcttacagaaaggtacccaaaacttggcaaatttagaagcttccaaaagaccatagaaggtaaaaacag |
37036402 |
T |
|
| Q |
226 |
aacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgataacactgtattcactgtgattattggtggttctag |
325 |
Q |
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|||| ||||||||||||||||| || |||||||| || |||||||||||||| ||||| | || || || || |||| |||||| ||||||||||| || |
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| T |
37036403 |
aacagccatcatcagaaacataacaagctagcttattagctggataatcaagagccaatagagacaaaacagtgttcaatgtgatgattggtggttcaag |
37036502 |
T |
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| Q |
326 |
cactggatctgctgttgtcacaaacaagtcca |
357 |
Q |
| |
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| T |
37036503 |
tacaggatctgctgttgtcacaaacaaatcca |
37036534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 111 - 364
Target Start/End: Complemental strand, 17656393 - 17656140
Alignment:
| Q |
111 |
tcatcacaaaagtacctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcat |
210 |
Q |
| |
|
||||||||||| || |||||||| || |||| ||| |||||||| || |||||||| ||||||||| | || |||||||| || |||| ||| |||| |
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| T |
17656393 |
tcatcacaaaaatatctaaaaggagccctaatttgtacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcat |
17656294 |
T |
|
| Q |
211 |
aaaaggtaagaggtgaacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgataacactgtattcactgtgat |
310 |
Q |
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| ||| | ||||| ||||| |||||||||||||| || || |||||||||| | ||| ||||||||||| || | |||||| || || || | |||||| |
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| T |
17656293 |
agaagattagaggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatgggtaatcaagtgctaatagtgataaaacagtgtttattgtgat |
17656194 |
T |
|
| Q |
311 |
tattggtggttctagcactggatctgctgttgtcacaaacaagtccaatgctgg |
364 |
Q |
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| T |
17656193 |
gattgctggttctaactcatcgtctgctgttgtcacaaataaatccactgctgg |
17656140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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