View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_7 (Length: 465)
Name: NF7971_low_7
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 42125761 - 42126203
Alignment:
| Q |
1 |
gaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125761 |
gaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttgga |
42125860 |
T |
|
| Q |
101 |
agaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcccaagaaaatggtatatagcatcagactcggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125861 |
agaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcccaagaaaatggtatatagcatcagactcggt |
42125960 |
T |
|
| Q |
201 |
tttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatatatcgtgactcgtggaga |
300 |
Q |
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| T |
42125961 |
tttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatagatcgtgactcgtggaca |
42126060 |
T |
|
| Q |
301 |
attattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagta |
400 |
Q |
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| T |
42126061 |
attattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagta |
42126160 |
T |
|
| Q |
401 |
aaagagagatatagataaacacagtgtcacatgcgatgtttgt |
443 |
Q |
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| T |
42126161 |
aaagagagatatagataaacacagtgtcacatgcgatgtttgt |
42126203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24929060 - 24929134
Alignment:
| Q |
1 |
gaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
75 |
Q |
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| T |
24929060 |
gaaaacatggtagcatatgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
348 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
420 |
Q |
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| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
347 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
423 |
Q |
| |
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| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
353 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
419 |
Q |
| |
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| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 20809087 - 20809151
Alignment:
| Q |
357 |
tgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaaca |
421 |
Q |
| |
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||||||||||| |||||| |||| |||||| | |||| ||||||| ||||||||| |||| |||| |
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| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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