View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7971_low_8 (Length: 448)

Name: NF7971_low_8
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7971_low_8
NF7971_low_8
[»] chr4 (4 HSPs)
chr4 (273-442)||(31265270-31265439)
chr4 (15-93)||(31265535-31265613)
chr4 (160-194)||(31265434-31265468)
chr4 (221-284)||(31253814-31253877)
[»] chr5 (1 HSPs)
chr5 (163-215)||(21268752-21268805)
[»] chr7 (1 HSPs)
chr7 (163-212)||(14732482-14732532)
[»] chr6 (1 HSPs)
chr6 (163-215)||(442148-442201)
[»] chr3 (1 HSPs)
chr3 (163-206)||(16133193-16133237)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 273 - 442
Target Start/End: Complemental strand, 31265439 - 31265270
Alignment:
Q  273 ttcttttgatttgatctgggaataattcgtgcagggacatattggggaattcagaagatgcgtgtgattatagacgggtttaagatttttattctgcaat 372  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265439 ttcttttgatttgatctgggaataattcgtgtggggacatattggggaattcagaagatgcgtgtgattatagacgggtttaagatttttattctgcaat 31265340  T
Q  373 tatgttaagctgctcattgttatttgttttcactgtttttgttacagcaaccatgaaccctctgatgatg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31265339 tatgttaagctgctcattgttatttgttttcactgtttttgttacagccaccatgaaccctctgatgatg 31265270  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 31265613 - 31265535
Alignment:
Q  15 atgaaagctattcaaaattccttaatctatgttttatatcaacgtagtttcttaaaactccttttcagtaacatctatg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265613 atgaaagctattcaaaattccttaatctatgttttatatcaacgtagtttcttaaaactccttttcagtaacatctatg 31265535  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 31265468 - 31265434
Alignment:
Q  160 tgttcttttcatatatgagcctaatttagttcttt 194  Q
    |||||||||||||||||||||||||||||||||||    
T  31265468 tgttcttttcatatatgagcctaatttagttcttt 31265434  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 31253877 - 31253814
Alignment:
Q  221 agggtgtttggaacaagttttacacgattaagaacaatgttaa-tttaaacttttcttttgattt 284  Q
    ||||||||||||||||||||  || || |||||||| |||||| |||||||||||||||||||||    
T  31253877 agggtgtttggaacaagtttctcatgaataagaaca-tgttaaatttaaacttttcttttgattt 31253814  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 21268752 - 21268805
Alignment:
Q  163 tcttttcat-atatgagcctaatttagttctttcagatttggttgctggattaa 215  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||    
T  21268752 tcttttcatgatatgagcctaatttagttccttcagatttggttgttgggttaa 21268805  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 14732532 - 14732482
Alignment:
Q  163 tcttttcat-atatgagcctaatttagttctttcagatttggttgctggat 212  Q
    ||||||||| |||||||||||||||||||| |||||||||| ||| |||||    
T  14732532 tcttttcatgatatgagcctaatttagttccttcagatttgattgttggat 14732482  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 442148 - 442201
Alignment:
Q  163 tcttttcat-atatgagcctaatttagttctttcagatttggttgctggattaa 215  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||    
T  442148 tcttttcatgatatgagcctaatttagttccttcatatttggttgttgggttaa 442201  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 16133193 - 16133237
Alignment:
Q  163 tcttttcat-atatgagcctaatttagttctttcagatttggttg 206  Q
    ||||||||| |||||||||||||||||||| || |||||||||||    
T  16133193 tcttttcatgatatgagcctaatttagttccttaagatttggttg 16133237  T

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