View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7971_low_9 (Length: 447)
Name: NF7971_low_9
Description: NF7971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7971_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 48044051 - 48044482
Alignment:
| Q |
17 |
agtttgtaacaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaattgattctattt--------------------gtgatgcagat |
96 |
Q |
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| T |
48044051 |
agtttgtaacaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaattgattctatttgtagctttcggaggggatttgtgatgcagat |
48044150 |
T |
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| Q |
97 |
tgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagatag |
196 |
Q |
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| T |
48044151 |
tgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagatag |
48044250 |
T |
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| Q |
197 |
gtcacgctaatttgatttgaataattctccgagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctccaacct |
296 |
Q |
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| T |
48044251 |
gtcacgcttatttgatttgaataattctcagagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctccaacct |
48044350 |
T |
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| Q |
297 |
ttcctgttcgacaaacatttgaccccttgtgagaatgcagttgatcaattaggttgtgtcatgtgtgagacccaagcttaagatgctttcactcctctgt |
396 |
Q |
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| T |
48044351 |
ttcctgttcgacaaacatttgaccccttgtgagaatgcagttgatcaattaggttgtgtcatgtgtgagacccaagcttaagatgctttcactcctctgt |
48044450 |
T |
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| Q |
397 |
gcgtctcctatcttcaattgcatcttctattg |
428 |
Q |
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| T |
48044451 |
gcgtctcctatcttctattgcatcttctattg |
48044482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 48051839 - 48051958
Alignment:
| Q |
90 |
tgcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagg |
189 |
Q |
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| T |
48051839 |
tgcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagg |
48051938 |
T |
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| Q |
190 |
gagataggtcacgctaattt |
209 |
Q |
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| T |
48051939 |
gagatagatcatgctaattt |
48051958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 48057257 - 48057306
Alignment:
| Q |
25 |
acaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaat |
74 |
Q |
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| T |
48057257 |
acaaaattgatgaaacaatatcatcctaatagttttcacattgatgcaat |
48057306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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