View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_high_16 (Length: 359)
Name: NF7972_high_16
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 41 - 342
Target Start/End: Complemental strand, 39852457 - 39852144
Alignment:
| Q |
41 |
gtttataatttaaatgaataattaagcgcgttactgctatcgatttaagggcagtaacttgcttattgcggnnnnnnnctgaagaatatgtttgatactc |
140 |
Q |
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| T |
39852457 |
gtttataatttaaatgaataattaagcacgttactgctatcgatttaatggcagtaacttgcttattgcggtttttttctgaagaatatgtttgatactc |
39852358 |
T |
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| Q |
141 |
atcataaaccaacaaattcaaggtacaagacaatgtcttcatgagttac---nnnnnnnatcaaaataactcatctaagcaactt--------acttagg |
229 |
Q |
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| T |
39852357 |
atcataaaccaacaaattcaaggtacaagacaatgtcttcatgagttacttttttttttatcaaaataactcatctaagcaactttagtccacacttagg |
39852258 |
T |
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| Q |
230 |
atatttggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatcaattggtcgac-ttataca |
328 |
Q |
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| T |
39852257 |
acatttggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatcaattagtcgactttttaca |
39852158 |
T |
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| Q |
329 |
aataatgaataaac |
342 |
Q |
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| T |
39852157 |
aataatgaataaac |
39852144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 43189518 - 43189459
Alignment:
| Q |
246 |
atgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatac |
305 |
Q |
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| T |
43189518 |
atgtaaggctattcatagcttggaacggaagcgatgatggcatccctgtcaaggatatac |
43189459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 43208314 - 43208240
Alignment:
| Q |
235 |
tggaactttatatgtaaggcttctcatagcttggagcagaagcaatgatggcatccctgtcaaagatatacgaatc |
310 |
Q |
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| T |
43208314 |
tggaacttta-atgtaaggctcctcatagcttggaatagaagcgaggatagcatccttgtcaaggatataccaatc |
43208240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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