View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7972_high_17 (Length: 357)

Name: NF7972_high_17
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7972_high_17
NF7972_high_17
[»] chr3 (4 HSPs)
chr3 (13-99)||(8525805-8525893)
chr3 (125-167)||(8525910-8525952)
chr3 (323-357)||(8529511-8529545)
chr3 (205-241)||(8530245-8530281)
[»] chr2 (1 HSPs)
chr2 (26-97)||(32675428-32675500)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 8525805 - 8525893
Alignment:
Q  13 tgaatgtttcatgtcacaattgcttccactttatttttc--aaggacatataatttattttctaaaagtgaagaaaaattttagtttct 99  Q
    ||||| |||||||||||| || ||  ||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||    
T  8525805 tgaatttttcatgtcacagttcctcgcactttatttttgttaaggacatataatttattttttaaaagtgaagaaaaattttagtttct 8525893  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 8525910 - 8525952
Alignment:
Q  125 ccaatttataaaatatgtgtatgtataaaattacataaatatc 167  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  8525910 ccaatttataaaatatgtgtatgtataaaattacacaaatatc 8525952  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 8529511 - 8529545
Alignment:
Q  323 taaatctcatttattaaattatacatatagatgat 357  Q
    |||||||||||||||||||||||||||||||||||    
T  8529511 taaatctcatttattaaattatacatatagatgat 8529545  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 8530245 - 8530281
Alignment:
Q  205 ttataatttattttgaagagttaagtccaattttaat 241  Q
    |||||||||||||| |||||| |||||||||||||||    
T  8530245 ttataatttatttttaagagtgaagtccaattttaat 8530281  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 32675500 - 32675428
Alignment:
Q  26 tcacaattgcttccactttatttttcaaggacatataatttattttct--aaaagtgaagaaaaattttagttt 97  Q
    |||||||| || |||||||||||||||| ||||||||||||||||| |  |||||||||||| |||||||||||    
T  32675500 tcacaatttctcccactttatttttcaa-gacatataatttatttttttaaaaagtgaagaacaattttagttt 32675428  T

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