View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7972_high_18 (Length: 332)
Name: NF7972_high_18
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 154 - 315
Target Start/End: Original strand, 24632017 - 24632179
Alignment:
| Q |
154 |
ccgaattcatctttgtttacttgacagacagagaataaaaagttaaaa-gattgaaccaataatgaatgctgaaatgctactccaatcaaatccactgaa |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24632017 |
ccgaattcatctttgtttactcgacagacagagaataaaaagttaaaaagattgaaccaataatgaatgctgaaatgctcctccaatcaaatccactgaa |
24632116 |
T |
|
| Q |
253 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24632117 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
24632179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24631838 - 24631998
Alignment:
| Q |
1 |
atgtccttggaaacgtgcgtgtctataattttatttttgttnnnnnnnctaaatagtgtttattcaatctgagccattgatttttgatttaccacatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24631838 |
atgtccttggaaacgtgcgtgtctataattttatttttgttaaaaaaactaaatagtgtttattcaatctgagccattgatttatgatttaccacatggc |
24631937 |
T |
|
| Q |
101 |
gtacatctaagcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24631938 |
gtacatctaagcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
24631998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 154 - 315
Target Start/End: Complemental strand, 52498736 - 52498574
Alignment:
| Q |
154 |
ccgaattcatctttgtttacttgacagacagagaataaaaagttaaaa-gattgaaccaataatgaatgctgaaatgctactccaatcaaatccactgaa |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52498736 |
ccgaattcatctttgtttactcgacagacagagaataaaaagttaaaaagattgaaccaataatgaatgctgaaatgctcctccaatcaaatccactgaa |
52498637 |
T |
|
| Q |
253 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52498636 |
cgtgtggtcaatttaccattacacccctcctcgtgttggacattcttcgtcaaacacccacag |
52498574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 52498915 - 52498755
Alignment:
| Q |
1 |
atgtccttggaaacgtgcgtgtctataattttatttttgttnnnnnnnctaaatagtgtttattcaatctgagccattgatttttgatttaccacatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52498915 |
atgtccttggaaacgtgcgtgtctataattttatttttgttaaaaaaactaaatagtgtttattcaatctgagccattgatttatgatttaccacatggc |
52498816 |
T |
|
| Q |
101 |
gtacatctaagcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52498815 |
gtacatctaagcaaagaatcgggaaagtggatgaaacattgactggagcagatccgaattc |
52498755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University