View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_high_2 (Length: 738)
Name: NF7972_high_2
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Original strand, 34687411 - 34688122
Alignment:
| Q |
18 |
aacaacatgtatattataacgattagttgatgtttggttttcaggttttggtgaggaagatggtatgaaaaaatgtagggtgtttactaccaatgaagta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687411 |
aacaacatgtatattataacgattagttgatgtttggttttcaggttttggtgaggaagatggtatgaaaaaatgtagggtgtttactaccaatgaagta |
34687510 |
T |
|
| Q |
118 |
atcgaggttaacgctgggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687511 |
atcgaggttaacgctgggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggg |
34687610 |
T |
|
| Q |
218 |
gtgtcaccctcaactcactctaccatggcgctgattattatctggtatgcaacttttttcttatctaccatggagtattttactaatatatattatgagt |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687611 |
gtgtcaccctcaactcactctaccatggggctgattattatctggtatgcaacttttttcttatctaccatggagtattttactaatatatattatgagt |
34687710 |
T |
|
| Q |
318 |
gaacaacaattgcttagacacaatttataaatataaatgatttggacacacatagatcacatacatatcaattaatcatttgaaaaatatatgtttaagg |
417 |
Q |
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||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687711 |
gaacaacaattacttagacactaattaccaatataaatgatttggacacacatagatcacatacatatcaattaatcatttgaaaaatatatgtttaagg |
34687810 |
T |
|
| Q |
418 |
ag----aaatgctatttagtacggtaagttcccaaatcattttccctt-cnnnnnnnnnnnnnngttcccaaatcattttgattagtgggtaatgatatt |
512 |
Q |
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|| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | |
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| T |
34687811 |
agtaattaatgttatttagtatggtaagttcccaaatcattttcccttaaaaataaaaataaaagttcccaaatcattttgattggtgggtaatgata-t |
34687909 |
T |
|
| Q |
513 |
tttcccttcctccaaaaatgatcaatagatgaacctttaacatttttagtaaaaagaactgaattttttaataataaaataatggacaacaaacataata |
612 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34687910 |
tttcccttcctctaaaaatgatcaatagatgaacctttaacatttttagtaaaaagaactgaattttataataataaaataatggacaacaaacataata |
34688009 |
T |
|
| Q |
613 |
gnnnnnnnncagggacaaatataacagtttatagttcttnnnnnnnnncataatagtttatt-aaaaggaggatctgtcgttggactagatctgtattag |
711 |
Q |
| |
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| |||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||| |||||||||||| |
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| T |
34688010 |
gttttttttcagggacaaacataacagtttatagttctt-aaaaaaaacataagagtttattaaaaaggaggatttgtcgttgtactggatctgtattag |
34688108 |
T |
|
| Q |
712 |
acatcccctctttc |
725 |
Q |
| |
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|||||||||||||| |
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| T |
34688109 |
acatcccctctttc |
34688122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 133 - 281
Target Start/End: Original strand, 34697438 - 34697585
Alignment:
| Q |
133 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggggtgtcaccctcaact |
232 |
Q |
| |
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|||||||||||||||||| ||| |||||| || ||||||||||| ||||||||| | || |||||||||||| ||||| ||||||||||| ||||||| |
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| T |
34697438 |
gggccctttaacgttcgtaaattctttggcgatggagcagttctgcttgactcctccggtgtcccggttctaaccgatgagtggggtgtcacactcaact |
34697537 |
T |
|
| Q |
233 |
cactctaccatggcgctgattattatctggtatgcaacttttttcttat |
281 |
Q |
| |
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||||| ||||||| | |||||||| ||||| ||||| ||||||||||| |
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| T |
34697538 |
cactccaccatggggttgattatttcctggtctgcaa-ttttttcttat |
34697585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 24968926 - 24969113
Alignment:
| Q |
58 |
tcaggttttggtgaggaagatggtatgaaaaaatgtagggtgtttactaccaatgaagtaatcgaggttaacgctgggccctttaacgttcgtgaatcct |
157 |
Q |
| |
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|||||||||||| |||||||||||| || ||||| ||||||| |||||| || ||| |||||||| | || ||| |||||||||||||||||| | |
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| T |
24968926 |
tcaggttttggtaaggaagatggtacgacaaaatatagggtggttactaatggtgccgtattcgaggttcatgcagggtcctttaacgttcgtgaattgt |
24969025 |
T |
|
| Q |
158 |
ttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggggtgtcaccctcaactcactctaccatgg |
245 |
Q |
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||||| || ||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||| |
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| T |
24969026 |
ttggtgatgaagcagttctatttgactcctttggtaccccggttctaaccgatgagtggggtgtccccctcaactcactccaccatgg |
24969113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 8285698 - 8285828
Alignment:
| Q |
133 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggggtgtcaccctcaact |
232 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||| || |||||||| ||||| |||||||| |||||| | | |
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| T |
8285698 |
gggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcctctggtactccagttctaacagatgagtggggtgttaccctcgatt |
8285797 |
T |
|
| Q |
233 |
cactctaccatggcgctgattattatctggt |
263 |
Q |
| |
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| ||| ||||||| ||||| ||||| ||||| |
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| T |
8285798 |
cgctccaccatggtgctgagtattacctggt |
8285828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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