View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_high_5 (Length: 543)
Name: NF7972_high_5
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 12 - 518
Target Start/End: Original strand, 8163570 - 8164080
Alignment:
| Q |
12 |
agatgaatataagggatttctgagtcctaaagtagtgtaagcttaagtaacaccctattacaaaagtaaaataaatgtaacctattataaatatattatt |
111 |
Q |
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| T |
8163570 |
agatgaatacaagggatttctaagtcctaaaatagtgtaagcttaagtaacaccctattgcaaaagtaaaataaatgtaacctattataaatatattatt |
8163669 |
T |
|
| Q |
112 |
ttctaaaggtaacaacaaaaaagttagtatataaacttattcttaatttaatttaatgaataaaataggaaggattttgaagcctatgctgatttttgct |
211 |
Q |
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| T |
8163670 |
ttctaaaggtaacaacaaaaaagttagtgtataaacttattcttaatttaatttaatgaataaaataggaaggattttgaagcctatgctgatttttgct |
8163769 |
T |
|
| Q |
212 |
tcaagacatttggagatagggttaagcattgggtgacacttaatgagcctgtttcatataccattaatggataccatggaggcacctctccacctgcaag |
311 |
Q |
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| T |
8163770 |
tcaagacatttggagatagggttaagcattgggtgacacttaatgagcctgtttcctacaccattaatggataccatggaggcacttctccacctgcaag |
8163869 |
T |
|
| Q |
312 |
atgctctaaatatgttggaaattgctctactggtgactcaactacagaaccctacattgttgctcatcactttatacttgctcatgctgctgcagccaaa |
411 |
Q |
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| T |
8163870 |
atgctctaaatatgttggaaattgctctactggtgactcaactacagaaccctacattgttgctcatcactttatactttctcatgctgctgcagccaaa |
8163969 |
T |
|
| Q |
412 |
ttgtacaaggctaaatatcaggtaaattgatcttaattttatcggttaaaatgcatatacccaatcaaatgtgtgagctagtctca----ttatttaaaa |
507 |
Q |
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| T |
8163970 |
ttgtataaggccaaatatcaggtaatttgatctaaactttatcagtcaagatgcatatagttaatcaaatgtgtgagctagtctcattctttatttaaaa |
8164069 |
T |
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| Q |
508 |
actattaagca |
518 |
Q |
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| T |
8164070 |
actatgaagca |
8164080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 128 - 436
Target Start/End: Original strand, 8139792 - 8140095
Alignment:
| Q |
128 |
aaaaaagttagtatataaacttattcttaatttaatttaatgaataaaataggaaggattttgaagcctatgctgatttttgcttcaagacatttggaga |
227 |
Q |
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| T |
8139792 |
aaaaaggttaatatataaacttattcttaa-----tttaatggataaaacaggaaggatttcgcagtctatgctgacttttgcttcaagacatttggaga |
8139886 |
T |
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| Q |
228 |
tagggttaagcattgggtgacacttaatgagcctgtttcatataccattaatggataccatggaggcacctctccacctgcaagatgctctaaatatgtt |
327 |
Q |
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| T |
8139887 |
tagggttaagcattgggtgacacttaatgaaccttattcatacaccatcaatggatataatggtggtacttttgcacctggtagatgttctaaatatgtt |
8139986 |
T |
|
| Q |
328 |
ggaaattgctctactggtgactcaactacagaaccctacattgttgctcatcactttatacttgctcatgctgctgcagccaaattgtacaaggctaaat |
427 |
Q |
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| T |
8139987 |
gcaaattgcactactggtgactcaagtacagagccctacattgttgctcataacttgatactttctcatgctgctgcagtcagagtatacaagagaaaat |
8140086 |
T |
|
| Q |
428 |
atcaggtaa |
436 |
Q |
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| T |
8140087 |
atcaggtaa |
8140095 |
T |
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