View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7972_high_9 (Length: 424)

Name: NF7972_high_9
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7972_high_9
NF7972_high_9
[»] chr4 (6 HSPs)
chr4 (12-411)||(52849314-52849713)
chr4 (83-147)||(25187025-25187089)
chr4 (55-107)||(37945532-37945584)
chr4 (55-107)||(16871699-16871751)
chr4 (59-107)||(16543408-16543456)
chr4 (91-147)||(24226052-24226108)
[»] chr6 (7 HSPs)
chr6 (55-147)||(28063019-28063109)
chr6 (55-147)||(28064674-28064766)
chr6 (55-107)||(9290665-9290717)
chr6 (67-125)||(9401682-9401739)
chr6 (52-106)||(21862738-21862792)
chr6 (71-107)||(22868509-22868545)
chr6 (372-412)||(25085196-25085236)
[»] chr2 (3 HSPs)
chr2 (55-107)||(8986975-8987027)
chr2 (55-107)||(8985622-8985674)
chr2 (55-107)||(32291203-32291255)
[»] chr7 (6 HSPs)
chr7 (23-107)||(21814475-21814559)
chr7 (23-106)||(15614231-15614312)
chr7 (55-107)||(46963075-46963127)
chr7 (52-104)||(46964426-46964478)
chr7 (71-107)||(2628270-2628306)
chr7 (71-107)||(44337395-44337431)
[»] chr3 (3 HSPs)
chr3 (23-107)||(16463015-16463099)
chr3 (71-107)||(30057133-30057169)
chr3 (55-107)||(46691460-46691511)
[»] chr1 (2 HSPs)
chr1 (52-107)||(15629355-15629410)
chr1 (55-107)||(6696063-6696115)
[»] chr8 (4 HSPs)
chr8 (55-125)||(43516156-43516225)
chr8 (71-107)||(20241073-20241109)
chr8 (71-107)||(20251958-20251994)
chr8 (75-107)||(43615506-43615538)
[»] chr5 (1 HSPs)
chr5 (55-107)||(11320486-11320537)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 52849314 - 52849713
Alignment:
Q  12 agagataaagttagggtttcatcgaatacaaaaatagataaatattacaaaaggatactagagaatatataataaaatttaatggactctaacttaacag 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  52849314 agagacaaagttagggtttcatcgaatacaaaaatagataaatattacaaaaggatactcgagaatatataataaaacttaatggactctaacttaacag 52849413  T
Q  112 gcccaataacatagtctgatactttattatctaacaagtttaaggcttttagttgattttaatagtttaggaactaaactatcctatcaaagataaaatt 211  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52849414 acccaataacatagtccgatactttattatctaacaagtttaaggcttttagttgattttaatagtttaggaactaaactatcctatcaaagataaaatt 52849513  T
Q  212 agtttagatacttttcttccatcttttcctattatcaacatgtgtcggtttgagtcgaagctaattagcttagacactttaaactacgggtggacccatt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52849514 agtttagatacttttcttccatcttttcctattatcaacatgtgtcggtttgagtcgaagctaattagcttagacactttaaactacgggtggatccatt 52849613  T
Q  312 caaagactatgtgtggttaaagccaaacatctaatttccctatttttaaattttttattattataaataaaatacaatacgttaaggataagaacaacaa 411  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  52849614 caaaggctatgtgtggttaaagccaaacatctaatttccctatttttaaattttttattattacaaataaaacacaatacgttaaggataagaacaacaa 52849713  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 25187025 - 25187089
Alignment:
Q  83 ataaaatttaatggactctaacttaacaggcccaataacatagtctgatactttattatctaaca 147  Q
    |||||| |||||||||||||   |||||||||||||||||||| | |||||||||||||||||||    
T  25187025 ataaaacttaatggactctagactaacaggcccaataacatagcccgatactttattatctaaca 25187089  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 37945584 - 37945532
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  37945584 attacaaaaggttataagagaatatataataaaatttaatggactctaactta 37945532  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 16871751 - 16871699
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  ||| ||||||||||||||| |||||||||||||||||    
T  16871751 attacaaaaggttataagataatatataataaaatctaatggactctaactta 16871699  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16543456 - 16543408
Alignment:
Q  59 caaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||| |||  ||||||||||||||||| |||||| |||||||||||    
T  16543456 caaaaggttacatgagaatatataataaaacttaatgaactctaactta 16543408  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 24226108 - 24226052
Alignment:
Q  91 taatggactctaacttaacaggcccaataacatagtctgatactttattatctaaca 147  Q
    ||||||||| |||  ||||| || ||||| ||||||||| |||||||||||||||||    
T  24226108 taatggactttaaactaacatgctcaatagcatagtctgttactttattatctaaca 24226052  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 28063019 - 28063109
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaacttaacaggcccaataacatagtctgatactttattatctaaca 147  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||  ||||||| ||||||| |||| | ||||||||||||| |||||    
T  28063019 attacaaaaggttactagagaatatat-ataaaatctaatggactctaaactaacaggtccaataa-atagcccgatactttattatttaaca 28063109  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 28064674 - 28064766
Alignment:
Q  55 attacaaaaggatactagagaatatata-ataaaatttaatggactctaacttaacaggcccaataacatagtctgatactttattatctaaca 147  Q
    ||||||||||| |||||||||||||| | ||||||  |||||||||||||  |||||| ||||||||||||  ||||||||||||||| |||||    
T  28064674 attacaaaaggttactagagaatataaatataaaacctaatggactctaaactaacag-cccaataacataacctgatactttattatttaaca 28064766  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 9290665 - 9290717
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||||||    
T  9290665 attacaaaaggttataagagaatatataataaaacctaatggactctaactta 9290717  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 9401739 - 9401682
Alignment:
Q  67 tactagagaatatataataaaatttaatggactctaacttaacaggcccaataacatag 125  Q
    |||||||||||||||| |||||| ||||||||| |||  |||||||| |||||||||||    
T  9401739 tactagagaatatata-taaaatctaatggactttaaactaacaggctcaataacatag 9401682  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 21862792 - 21862738
Alignment:
Q  52 aatattacaaaaggatactagagaatatataataaaatttaatggactctaactt 106  Q
    |||||||||||  | ||||||||||||||||||||||  ||||| ||||||||||    
T  21862792 aatattacaaagagttactagagaatatataataaaacctaatgcactctaactt 21862738  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 22868545 - 22868509
Alignment:
Q  71 agagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||||||||  |||||||||||||||||    
T  22868545 agagaatatataataaaacctaatggactctaactta 22868509  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 25085196 - 25085236
Alignment:
Q  372 ttataaataaaatacaatacgttaaggataagaacaacaaa 412  Q
    |||||||||||| |||||| |||||| ||||||||||||||    
T  25085196 ttataaataaaacacaatatgttaagaataagaacaacaaa 25085236  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 8987027 - 8986975
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  8987027 attacaaaaggttataagagaatatataataaaatttaatggactctaactta 8986975  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 8985674 - 8985622
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||| |||||||    
T  8985674 attacaaaaggttataagagaatatataataaaatctaatggactttaactta 8985622  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 32291255 - 32291203
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  |||||||||||||||||  ||||||||||||||||||    
T  32291255 attacaaaaggttataagagaatatataataaatcttaatggactctaactta 32291203  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 21814559 - 21814475
Alignment:
Q  23 tagggtttcatcgaatacaaaaa-tagataaatattacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||  ||||||||||| ||||| || |||||||||| ||| ||||||||||||||| |||  |||||||||||||||||    
T  21814559 tagggtttcaaggaatacaaaaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaactta 21814475  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 15614231 - 15614312
Alignment:
Q  23 tagggtttcatcgaatacaaaaatagataaatattacaaaaggatactagagaatatataataaaatttaatggactctaactt 106  Q
    ||||||||||| |||||  | ||||| | |||||||||||||| ||  | ||||||||||||||||  ||||||||||||||||    
T  15614231 tagggtttcatagaata--acaatagcttaatattacaaaaggttataaaagaatatataataaaacctaatggactctaactt 15614312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 46963075 - 46963127
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  ||||||||| ||||||||| |||||||||||||||||    
T  46963075 attacaaaaggttataagagaatatctaataaaatctaatggactctaactta 46963127  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 46964426 - 46964478
Alignment:
Q  52 aatattacaaaaggatactagagaatatataataaaatttaatggactctaac 104  Q
    |||||||||||| | ||  ||||||||||||||||||| ||||||||||||||    
T  46964426 aatattacaaaaagttataagagaatatataataaaatctaatggactctaac 46964478  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 2628270 - 2628306
Alignment:
Q  71 agagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||||||||  |||||||||||||||||    
T  2628270 agagaatatataataaaacctaatggactctaactta 2628306  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 44337431 - 44337395
Alignment:
Q  71 agagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  44337431 agagaatatataataaaatctaacggactctaactta 44337395  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 16463099 - 16463015
Alignment:
Q  23 tagggtttcatcgaatacaaaaa-tagataaatattacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||  ||||||||||| ||||| || |||||||||| ||| ||||||||||||||| |||  |||||||||||||||||    
T  16463099 tagggtttcaaggaatacaaaaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaactta 16463015  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 30057169 - 30057133
Alignment:
Q  71 agagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  30057169 agagaatatataacaaaatctaatggactctaactta 30057133  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 46691460 - 46691511
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||||||    
T  46691460 attacaaaaggttataagagaatatataataaaa-ctaatggactctaactta 46691511  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 15629355 - 15629410
Alignment:
Q  52 aatattacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    |||||||||||||| ||  ||||||||||||||||||| ||||| |||||||||||    
T  15629355 aatattacaaaaggttataagagaatatataataaaatctaatgaactctaactta 15629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6696115 - 6696063
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  ||||||||| ||||||||| |||||||||||||||||    
T  6696115 attacaaaaggttataagagaatatttaataaaatctaatggactctaactta 6696063  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 43516225 - 43516156
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaacttaacaggcccaataacatag 125  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||||  ||||||| |||||| |||||    
T  43516225 attacataaggttactagagaatatat-ataaaacctaatggactctaaactaacaggaccaatagcatag 43516156  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 20241109 - 20241073
Alignment:
Q  71 agagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20241109 agagaatatataataaaatctaacggactctaactta 20241073  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 20251958 - 20251994
Alignment:
Q  71 agagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20251958 agagaatatataataaaatctaacggactctaactta 20251994  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 43615538 - 43615506
Alignment:
Q  75 aatatataataaaatttaatggactctaactta 107  Q
    ||||||||||||||| |||||||||||||||||    
T  43615538 aatatataataaaatctaatggactctaactta 43615506  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 11320486 - 11320537
Alignment:
Q  55 attacaaaaggatactagagaatatataataaaatttaatggactctaactta 107  Q
    ||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||    
T  11320486 attacaaaaggttataagagaatatataataaaa-ttaatggactccaactta 11320537  T

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