View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_1 (Length: 789)
Name: NF7972_low_1
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 440 - 773
Target Start/End: Complemental strand, 22197089 - 22196766
Alignment:
| Q |
440 |
gttaatatttgtaagcaaatatagttgacttaaccagattgtttctttttgttagaccatcccatagttgtataccaaagtacttaatttgctttcggtt |
539 |
Q |
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| T |
22197089 |
gttaatatttgtaagcaaatatagttgacttaaccagattgtttctttttgttagaccatcccatagttgtataccaaagtacttaatttcatttcagtt |
22196990 |
T |
|
| Q |
540 |
-catacatctagtgtgaaatgcagatagttgatagaagcaattgacttcaatgaaactttggactttgaatatattcattccataataagcaaacatgac |
638 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22196989 |
tcaaacatctagtgtgaaatgcaggtagttgatagaagcaattgacttcaatgaaactttggactttgaatatattcattccataataagcaaacatgac |
22196890 |
T |
|
| Q |
639 |
attcacattggttggaaaacaatatggaaaacaatataattgttgaagtgtattccaacgattggttatagtgggattatagtag-ttttttgttaaatc |
737 |
Q |
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| T |
22196889 |
attcacattggttggaaaaca------------atataattgttgaagtgtattccaacgattggttatagtgggattatagtagtttttttgttaaatc |
22196802 |
T |
|
| Q |
738 |
aagtgttacaatatttccattacgtataacaatgtt |
773 |
Q |
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||| ||| |||||||| ||||| ||||||||||||| |
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| T |
22196801 |
aagcgttgcaatattttcattaggtataacaatgtt |
22196766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 440 - 773
Target Start/End: Complemental strand, 22194340 - 22194019
Alignment:
| Q |
440 |
gttaatatttgtaagcaaatatagttgacttaaccagattgtttctttttgttagaccatcccatagttgtataccaaagtacttaatttgctttcggtt |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
22194340 |
gttaatatttgtaagcaaatatagttgacttaaccagattgtttctttttgttagaccattccatagttgtataccaaagtacttaatttcatttcggtt |
22194241 |
T |
|
| Q |
540 |
catacatctagtgtgaaatgcagatagttgatagaagcaattgacttcaatgaaactttggactttgaatatattcattccataataagcaaacatgaca |
639 |
Q |
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|| |||| ||||||||||||| | ||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22194240 |
caaacatttagtgtgaaatgccggtagttaattgaagcaattgacttcaatgaatctttggactttgaatatattcattgcataataagcaaacatgaca |
22194141 |
T |
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| Q |
640 |
ttcacattggttggaaaacaatatggaaaacaatataattgttgaagtgtattccaacgattggttatagtgggattatagtagttttttgttaaatcaa |
739 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22194140 |
ttcacattggttggaaaaca------------atataattgttgaagtgtattccaacgattggttatagtgggattatagtagttttttgttaaatcaa |
22194053 |
T |
|
| Q |
740 |
gtgttacaatatttccattacgtataacaatgtt |
773 |
Q |
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|||||||||||||| ||||| ||||||||||||| |
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| T |
22194052 |
gtgttacaatattttcattaggtataacaatgtt |
22194019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 22197522 - 22197167
Alignment:
| Q |
10 |
gtagcagagatgaatataatacagaaatttacattgcaaaggataattatagatatcgctaaatattgttggttac-gttacatagtagaaattaaaaaa |
108 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
22197522 |
gtagcaaagataaatataatacagaaatttacattgcaaaggatagttatagatattgctaaatattgttggttaccgttatatagtagaaattaaaaaa |
22197423 |
T |
|
| Q |
109 |
ggacaattattgattatcctnnnnnnnntaatatgacaaacatcataattattatgtgtaaattt----ctaattttatcaggttgaaatcgattatttc |
204 |
Q |
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||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||| || ||| |||||| ||||||||| |
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| T |
22197422 |
ggataattatagattatccggaaaaa---aatatgacaaacatcataattattatgcgtaaatttgaatctaattgtaccagtttgaaactgattatttc |
22197326 |
T |
|
| Q |
205 |
gacaaannnnnnnnc-actctgatccaatttttgtttttaagttgtcgtcatgattgagaatgatattgaaaagttgatgatcgtcattatctccacata |
303 |
Q |
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||||| | ||| || |||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
22197325 |
gacaatttttttttccactttggtccaatttttttggttaagttgtcgtcaagattgagaatgatata-aaaagttgatgatcttcattatctccacata |
22197227 |
T |
|
| Q |
304 |
agattaaagtttgacatatattatgttggagttattgaccaaagtccatagttagtttct |
363 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22197226 |
agattaaagtttgacgtatattatgttggaggtattgaccaaagtccatagttagtttct |
22197167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 22194773 - 22194419
Alignment:
| Q |
10 |
gtagcagagatgaatataatacagaaatttacattgcaaaggataattatagatatcgctaaatattgttggttac-gttacatagtagaaattaaaaaa |
108 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||| |||| |||||||||| |||||||||| || ||||| |||| |||||||||||| ||||| |
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| T |
22194773 |
gtagcaaagataaatataatacagaaatttacattgcaaaagatagttatagatattgctaaatattatttgttaccgttatatagtagaaattcaaaaa |
22194674 |
T |
|
| Q |
109 |
ggacaattattgattatcctnnnnnnnntaatatgacaaacatcataattattatgtgtaaattt----ctaattttatcaggttgaaatcgattatttc |
204 |
Q |
| |
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||| |||||| |||||||| || |||||||||||||||||||||||| |||||||| |||||| || ||| |||||| ||||||||| |
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| T |
22194673 |
ggataattatggattatccggaaaaa---aaaatgacaaacatcataattattatgcgtaaatttgaatctaattgtaccagtttgaaactgattatttc |
22194577 |
T |
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| Q |
205 |
gacaaannnnnnnncactctgatccaatttttgtttttaagttgtcgtcatgattgagaatgatattgaaaagttgatgatcgtcattatctccacataa |
304 |
Q |
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|||||| |||| || |||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||| || |
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| T |
22194576 |
gacaaaatttttc-cactttggtccaatttttgtggttaagttgtcgtcatgactgagaatgatattaaaaagttgataatcttcattatctccacaaaa |
22194478 |
T |
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| Q |
305 |
gattaaagtttgacatatattatgttggagttattgaccaaagtccatagttagtttct |
363 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22194477 |
gattaaagtttgacgtatattatgttggaggtattgaccaaagtccatagttagtttct |
22194419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 28717581 - 28717504
Alignment:
| Q |
273 |
aaaagttgatgatcgtcattatctccacataagattaaagtttgacatatattatgttggagttattgaccaaagtcc |
350 |
Q |
| |
|
||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28717581 |
aaaagctgatgatctccattatctccacataacattaaagtttgacatatattatgttggaggtattgaccaaagtcc |
28717504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 635
Target Start/End: Complemental strand, 28717337 - 28717299
Alignment:
| Q |
597 |
ttggactttgaatatattcattccataataagcaaacat |
635 |
Q |
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| T |
28717337 |
ttggactttgaatatattcattccataataagcaaacat |
28717299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 28717421 - 28717377
Alignment:
| Q |
441 |
ttaatatttgtaagcaaatatagttgacttaaccagattgtttct |
485 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
28717421 |
ttaatattttcaagcaagtatagttgacttaaccagattgtttct |
28717377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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