View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_11 (Length: 455)
Name: NF7972_low_11
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 48403823 - 48403940
Alignment:
| Q |
8 |
tggtgttatcaatagctgagtgaaagctgcacatactccatatattacaactattggggcatttaaaaaataagtttaagctatcctcatcattggaatc |
107 |
Q |
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| T |
48403823 |
tggtgttatcaatagctgagtgaaagctgcacatactccatatattacaactattggggcatttaaaaaataaatttaagctatcctcatcattggaatc |
48403922 |
T |
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| Q |
108 |
acaaagagcacaattcca |
125 |
Q |
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| T |
48403923 |
acaaagagcacaattcca |
48403940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 299 - 439
Target Start/End: Original strand, 48407807 - 48407943
Alignment:
| Q |
299 |
ccgagtactcaccattattttctttcgtccacacaagattgtcctcgatcacagaatgatacatagacgtattcattatgtttatactggaggcagtttc |
398 |
Q |
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| T |
48407807 |
ccgagtactcaccattattttctttcgtcca----agattgtcctcggtcacagaatgatacatagacatattcattatgtttacactggaggcagtttc |
48407902 |
T |
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| Q |
399 |
atgataaaaatcgaactaatgaatgggacattccaagcttt |
439 |
Q |
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| T |
48407903 |
atgataaaaatcgaactaatgaatgggacattccaagcttt |
48407943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 35321610 - 35321558
Alignment:
| Q |
172 |
caatttctacaaacccgccatataaagtttgtgacctttggtggaactttaag |
224 |
Q |
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| T |
35321610 |
caatttctacaaacccgccatatgaagttcttaacctttggtgggagtttaag |
35321558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 5634204 - 5634114
Alignment:
| Q |
245 |
taaaatgatttatatcaagcaaatcctgcatacacaacttataagcactacaaaccgagtactcaccattattttctttcgtccacacaag |
335 |
Q |
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| T |
5634204 |
taaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaag |
5634114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 11568481 - 11568571
Alignment:
| Q |
245 |
taaaatgatttatatcaagcaaatcctgcatacacaacttataagcactacaaaccgagtactcaccattattttctttcgtccacacaag |
335 |
Q |
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| T |
11568481 |
taaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaag |
11568571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 19111271 - 19111361
Alignment:
| Q |
245 |
taaaatgatttatatcaagcaaatcctgcatacacaacttataagcactacaaaccgagtactcaccattattttctttcgtccacacaag |
335 |
Q |
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| T |
19111271 |
taaaatgattgacatcaagtaattcttgcatacacattttatatgcacttctaacagaatactcaccattattttccttcgtccaaacaag |
19111361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 33305833 - 33305885
Alignment:
| Q |
172 |
caatttctacaaacccgccatataaagtttgtgacctttggtggaactttaag |
224 |
Q |
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| T |
33305833 |
caatttctacaaacccgccatatgaagttcttaacctttggtgggagtttaag |
33305885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 31636861 - 31636809
Alignment:
| Q |
172 |
caatttctacaaacccgccatataaagtttgtgacctttggtggaactttaag |
224 |
Q |
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| T |
31636861 |
caatttctacaaacccgccatatgaagttcttaacctttggtgggagtttaag |
31636809 |
T |
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