View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7972_low_14 (Length: 402)
Name: NF7972_low_14
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 31745013 - 31745389
Alignment:
| Q |
20 |
ttctaaactttggttaaattgttctacactagtcaaatatttagatgaaatcgcaatcaaagtgtgcaaataatcaaaccatattgtgtgtattcatgat |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31745013 |
ttctaaactttggttaaattgttctaccctagtcaaatatttagatgaaatcgcaatcaaagtgtgcaaataatcaaaccatattgtgtgtattcatgat |
31745112 |
T |
|
| Q |
120 |
taac-ggttaaaccgtcaaatttaatttcaattttcaaaacattgttttcaagactaaaaaacaagataggaatttggattcaatgnnnnnnnaggattt |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31745113 |
taaccggttaaaccgtcaaatttaatttcaattttcaaaacattgttttcaagactaaaaaacaagataggaatttggattcaatgtttttttaggattt |
31745212 |
T |
|
| Q |
219 |
tgtgggagacatttaaatttgttagctgaacttttagctatttggagagatcttggcttgggaccttcgttagagctatcatcaaggaatctgactttaa |
318 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31745213 |
tgtgggagacatttaaatttattagcttaacttttagctatttggatagatcttggcttgggaccttcgttagagctatcatcaaggaatctgactttaa |
31745312 |
T |
|
| Q |
319 |
gacaccgttgaatttgatccgaatgaatttcatcatcatgcaactttgctttctctcctcgtaaagttttcttctct |
395 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31745313 |
gacaccattgaatttgatccgaatgaatttcatcatcatgcaactttgctttttctcctcgtaaagttttcttctct |
31745389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University