View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7972_low_16 (Length: 387)
Name: NF7972_low_16
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 7637534 - 7637903
Alignment:
| Q |
1 |
atttgataaacaatagttttcctcattaaacgatgaaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637534 |
atttgataaacaatatttttcctcattaaacgatgaaaaactcaacctatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgt |
7637633 |
T |
|
| Q |
101 |
agaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637634 |
tgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgcc |
7637733 |
T |
|
| Q |
201 |
acacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637734 |
acacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgt |
7637833 |
T |
|
| Q |
301 |
gccttcatagcttcttacttcggataaagcaaataataaatcaacaattggaggtacgtaggtgggttct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7637834 |
gccttcatagcttcttacttcggataaagcaaataataaatcaacaattggaggtacgtaggtgggttct |
7637903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 7606703 - 7607012
Alignment:
| Q |
1 |
atttgataaacaatagttttcctcattaaacgatgaaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgt |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||| || || |
|
|
| T |
7606703 |
atttgataaacaaagtttttcctcattagacgatgaaaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagt |
7606802 |
T |
|
| Q |
101 |
agaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgcc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
7606803 |
tgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgcc |
7606902 |
T |
|
| Q |
201 |
acacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || |
|
|
| T |
7606903 |
acacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgt |
7607002 |
T |
|
| Q |
301 |
gccttcatag |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
7607003 |
gccttcatag |
7607012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 79 - 370
Target Start/End: Original strand, 7615777 - 7616068
Alignment:
| Q |
79 |
gaaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttca |
178 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7615777 |
gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttca |
7615876 |
T |
|
| Q |
179 |
gcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaa |
278 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7615877 |
gcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaa |
7615976 |
T |
|
| Q |
279 |
ctgccaacaatggttttgatgtgccttcatagcttcttacttcggataaagcaaataataaatcaacaattggaggtacgtaggtgggttct |
370 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||| || ||| |||||| || ||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
7615977 |
ctgccaacaacggttttgaggtgccttcgtagctttcaaccccggttaaagcgaaaaatgaatcaacaattggaggtacataggtaggttct |
7616068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 7629088 - 7629448
Alignment:
| Q |
1 |
atttgataaacaatagttttcctcattaaacgatgaaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgt |
100 |
Q |
| |
|
||||||||||||| ||||| |||||| | || ||| | |||||| ||||||||||| |||| | ||||||| ||||||||||||||| || || |
|
|
| T |
7629088 |
atttgataaacaaagtttttcatcattagatgacgaagtagtcaacctatcagagtgattcttttctaactccaaaaagaaaggaaatcgtatgggaagt |
7629187 |
T |
|
| Q |
101 |
agaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgcc |
200 |
Q |
| |
|
||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7629188 |
tgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgcc |
7629287 |
T |
|
| Q |
201 |
acacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgt |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| ||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7629288 |
acacggactttccgtcaacaacaacatggttgaatgtgcaaccaataaagacaccgtcaactagctccgttacttgaacagccaacaatggttttgacgt |
7629387 |
T |
|
| Q |
301 |
gccttcatagcttcttacttcggataaa-gcaaataataaatcaacaattggaggtacgtag |
361 |
Q |
| |
|
|||||| |||||| ||| || ||||| ||||||| | |||| |||||| ||||||||||| |
|
|
| T |
7629388 |
gccttcgtagctt-ttatctcctataaaggcaaatagtgaatcgacaatttgaggtacgtag |
7629448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 35 - 315
Target Start/End: Complemental strand, 7655755 - 7655478
Alignment:
| Q |
35 |
gaaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtgttg |
134 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||| | ||| ||||||||||||||||| ||| ||| |||||||||||||||||||| || |||| |
|
|
| T |
7655755 |
gaaaaacttaacccatcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttg |
7655656 |
T |
|
| Q |
135 |
ggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggtt-aa |
233 |
Q |
| |
|
||| |||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||| ||||||| | || |||||||| || |
|
|
| T |
7655655 |
gggagttagatatttgatgatga---caaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgtccgtcagctacgacatggttgaa |
7655559 |
T |
|
| Q |
234 |
atgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatagcttct |
315 |
Q |
| |
|
|| | | |||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
7655558 |
atta-aagccaatgaagatgccgtcaactagctccgtgacttgaacagccaacaatggttttgatgtgccttcgtagtttct |
7655478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 39098306 - 39098453
Alignment:
| Q |
173 |
atttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgtta |
272 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | ||||| || || || |||||||| || | |||| | |||||||||||||| ||||| ||||| || | |
|
|
| T |
39098306 |
atttcagaccatgaattgatgaaatgccaaaacgacttaccatcgacaacaacatgattgattgagaagccaatgaaaataccatcaacaagctcagtaa |
39098405 |
T |
|
| Q |
273 |
cttgaactgccaacaatggttttgatgtgccttcatagcttcttactt |
320 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||| || |||||| |
|
|
| T |
39098406 |
cttgaactgcaagcaatggttttgatgtgccttcgtagttttttactt |
39098453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 305
Target Start/End: Original strand, 39075873 - 39076010
Alignment:
| Q |
168 |
gtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctc |
267 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | ||||| |||| || | |||||||||| || |||||||||| ||||| || | || ||| |
|
|
| T |
39075873 |
gtgagatttcagcccaagagttgatgaaatgccaaaatgacttggcgtctacacccacatggttaattgcaaaaccaatgaagataccatcgattaactc |
39075972 |
T |
|
| Q |
268 |
cgttacttgaactgccaacaatggttttgatgtgcctt |
305 |
Q |
| |
|
|||||||| ||||| | ||||||| ||||||||||| |
|
|
| T |
39075973 |
tgttacttgtactgcaagtaatggttgtgatgtgcctt |
39076010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 8910814 - 8910525
Alignment:
| Q |
1 |
atttgataaacaatagttttcctcattaaacgatgaaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8910814 |
atttgataaacaatgtttttcctcattaagcgatgaaaaactcaacccatcagagtgatccttttgttgctccaaagtgaaaggaaatcgtataggccgt |
8910715 |
T |
|
| Q |
101 |
agaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgcc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8910714 |
tgaac----tttggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaaatgcc |
8910619 |
T |
|
| Q |
201 |
acacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8910618 |
acacggactttccgtcaacgacaacatggttaaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttt |
8910525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 36 - 370
Target Start/End: Complemental strand, 8935718 - 8935384
Alignment:
| Q |
36 |
aaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtgttgg |
135 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8935718 |
aaaaactcaacccatcagagtgattcttttgttgctccaaagtgaaaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttgg |
8935619 |
T |
|
| Q |
136 |
gggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| | ||||||||| |
|
|
| T |
8935618 |
aggtttagatatttgatgatgacaacaactacgtgagatttcagcccaagaattgatgaaatgccacacagactttccgtcaatgacagcgtggttaaat |
8935519 |
T |
|
| Q |
236 |
gagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatagcttcttacttcggataaagcaaata |
335 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||| | |
|
|
| T |
8935518 |
gagcaaccaatgaaaataccgtcaattaactcagttacttgaactgccaacaatggttttgatgtgccttcgtagcttctaacatcggttaaagcaaaaa |
8935419 |
T |
|
| Q |
336 |
ataaatcaacaattggaggtacgtaggtgggttct |
370 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| |
|
|
| T |
8935418 |
atgaatcaacaattggtggtacgtaggtgggttct |
8935384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 138 - 370
Target Start/End: Complemental strand, 8934675 - 8934443
Alignment:
| Q |
138 |
gtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatga |
237 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| | ||||||||||| |
|
|
| T |
8934675 |
gtttaaatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacagactttccgtcaatgacagcgtggttaaatga |
8934576 |
T |
|
| Q |
238 |
gcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatagcttcttacttcggataaagcaaataat |
337 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| ||| |
|
|
| T |
8934575 |
gcaaccaatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgccttcgtagcttctaacaccggttaaagcaaaaaat |
8934476 |
T |
|
| Q |
338 |
aaatcaacaattggaggtacgtaggtgggttct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8934475 |
gaatcaacaattggaggtacgtaggtgggttct |
8934443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 147 - 370
Target Start/End: Complemental strand, 8930211 - 8929988
Alignment:
| Q |
147 |
tttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaat |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||| |||| | |||||||||||||||||||| |
|
|
| T |
8930211 |
tttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgtcacacagactttccatcaatgacagcgtggttaaatgagcaaccaat |
8930112 |
T |
|
| Q |
247 |
gaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatagcttcttacttcggataaagcaaataataaatcaaca |
346 |
Q |
| |
|
|||||||||||||| || ||| |||||||||| |||||||||||||||||||||| |||| |||||||| || ||| ||||||||| ||| |||||||| |
|
|
| T |
8930111 |
gaaaataccgtcaattaactcagttacttgaaatgccaacaatggttttgatgtgacttcgtagcttctaacaccggttaaagcaaaaaatgaatcaaca |
8930012 |
T |
|
| Q |
347 |
attggaggtacgtaggtgggttct |
370 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8930011 |
attggaggtacgtaggtgggttct |
8929988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 306
Target Start/End: Original strand, 8102974 - 8103248
Alignment:
| Q |
32 |
gatgaaaaactcaacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtg |
131 |
Q |
| |
|
||||||||||||||||||||||| || | ||||||| ||| | |||||| ||||||||||| || | | ||| ||||| |||||||||||| || |||| |
|
|
| T |
8102974 |
gatgaaaaactcaacccatcagattggttattttgtagcttcttagtgaagggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtg |
8103073 |
T |
|
| Q |
132 |
ttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggtt |
231 |
Q |
| |
|
||| | |||| ||| |||||| ||||| || |||||||||||||||||| ||||| ||||||| ||| | || |||| ||||| || |||||||| |
|
|
| T |
8103074 |
ttgagagtttggatgtttgattgcaacaaccaccacgtgagatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggtt |
8103173 |
T |
|
| Q |
232 |
aaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttc |
306 |
Q |
| |
|
||| | ||||||| || || |||||||||| ||| || ||||| || || |||||||||| |||||||||||| |
|
|
| T |
8103174 |
aaaagtaaaaccaataaagatgccgtcaactaactctgtcacttgcacggcaaacaatggttgtgatgtgccttc |
8103248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 306
Target Start/End: Complemental strand, 40146991 - 40146736
Alignment:
| Q |
48 |
catcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtgttgggggtttagatat |
147 |
Q |
| |
|
||||||||| || |||||| |||| | ||| |||||||||||||| || || ||| |||| ||||||||||||| ||||| ||| | |||| |||| |
|
|
| T |
40146991 |
catcagagtcattcttttgtggctctatagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgttatgagtttggatac |
40146892 |
T |
|
| Q |
148 |
ttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaaccaatg |
247 |
Q |
| |
|
||||| || ||||||| ||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||| || |||||||||||| |||||||| |
|
|
| T |
40146891 |
ttgat--tg-caacaaccacgcgagattttcgcccatgaattaatgaaaagccatgtggactctccgtcaacaaccgcatggttaaatgtaaaaccaatg |
40146795 |
T |
|
| Q |
248 |
aaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttc |
306 |
Q |
| |
|
|| | |||||||||| ||| || ||||| || || |||||||||| |||||||||||| |
|
|
| T |
40146794 |
aagaagccgtcaactaactctgtcacttgcacagctaacaatggttgtgatgtgccttc |
40146736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 315
Target Start/End: Original strand, 6501021 - 6501288
Alignment:
| Q |
44 |
aacccatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtgttgggggtttag |
143 |
Q |
| |
|
||||||| |||||||| |||||| |||||| ||| ||||||||||||| | || ||| | ||||||||||| |||| ||||||| |||| |||| | |
|
|
| T |
6501021 |
aacccattagagtgattattttgaggctccattgtggaaggaaatcgtatggaacgctgaatatcatttggaaac-aacgttctagtgatgggagtttgg |
6501119 |
T |
|
| Q |
144 |
atatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatgagcaacc |
243 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||||||||||||| |||| |||||||||| ||||||||| || ||| |||||||| ||| | || |
|
|
| T |
6501120 |
atatttgatta---caacaaccacgtgaaatttcagcccaggaactgataaaatgccacatggactttccaccagtgaccacatggttgaatctaaaccc |
6501216 |
T |
|
| Q |
244 |
aatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatagcttct |
315 |
Q |
| |
|
||| || | |||| |||||| ||| || ||||| ||||| | ||||||||||||| ||||||| ||| |||| |
|
|
| T |
6501217 |
aataaagacaccgccaactaactctgtcacttgcactgcaagcaatggttttgatatgccttcgtagtttct |
6501288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 15190757 - 15190642
Alignment:
| Q |
80 |
aaaggaaatcgtataggccgtagaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcag |
179 |
Q |
| |
|
|||||||||||||| || ||| ||| ||||||||||| |||| || |||||||| ||| |||||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
15190757 |
aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatattt---gatggcaagaaccacgtgagatttcag |
15190661 |
T |
|
| Q |
180 |
cccaggaattgatgaaatg |
198 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
15190660 |
ccagtgaattgatgaaatg |
15190642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 34174825 - 34174889
Alignment:
| Q |
241 |
accaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgcctt |
305 |
Q |
| |
|
||||||||| ||||| |||| || ||| |||||||||||||| | |||||||| |||||| |||| |
|
|
| T |
34174825 |
accaatgaagataccatcaattaactctgttacttgaactgcaagcaatggttgtgatgtacctt |
34174889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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