View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_17 (Length: 373)
Name: NF7972_low_17
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 70 - 353
Target Start/End: Original strand, 13297697 - 13297980
Alignment:
| Q |
70 |
acatacaccaaaaccagacacttaagactagtaatcaattatatatctccaacattcttttgcaaattaatcattcaccaatgcaggtggtcgaaaatcg |
169 |
Q |
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| T |
13297697 |
acatacatccaaaccagacaattaaaactagtaatcaattatatatctccaacattcttttgcaaattaatcattcaccaatgcaggtggtcgaaaattg |
13297796 |
T |
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| Q |
170 |
cgaaacatttaccgggaagaaccgataatgagataaagaactactggaggacaaggatccaaaagcatatcaagcaagctgagaactctcaatctcaaga |
269 |
Q |
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| T |
13297797 |
cgaaacatctaccgggaagaaccgataatgagataaagaactactggaggacaaggatccaaaagcatatcaagcaagctgagaactctcaatctcaaga |
13297896 |
T |
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| Q |
270 |
acaaggttctgatattcaaataaatgatgataataataataatcaacttataggaagcacaagccaaatttccaacattgctga |
353 |
Q |
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| T |
13297897 |
acaaggttctgatattcaaataaatgatgataataataataatcaacttataggaagcacaagccaaatttccaacattgctga |
13297980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 13297652 - 13297684
Alignment:
| Q |
16 |
atttaccgcttaaaaaccatatggttaatacga |
48 |
Q |
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| T |
13297652 |
atttaccgcttaaaaaccagatggttaatacga |
13297684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 38720040 - 38720115
Alignment:
| Q |
149 |
aatgcaggtggtcgaaaatcgcgaaacatttaccgggaagaaccgataatgagataaagaactactggaggacaag |
224 |
Q |
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| T |
38720040 |
aatgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattggagaacaag |
38720115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 49848626 - 49848555
Alignment:
| Q |
154 |
aggtggtcgaaaatcgcgaaacatttaccgggaagaaccgataatgagataaagaactactggaggacaagg |
225 |
Q |
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| T |
49848626 |
aggtggtcaaaaattgctcagcatttaccaggaagaacagataatgagataaagaactattggagaacaagg |
49848555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 32447534 - 32447494
Alignment:
| Q |
181 |
ccgggaagaaccgataatgagataaagaactactggaggac |
221 |
Q |
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| T |
32447534 |
ccgggaagaacagacaatgagataaagaactattggaggac |
32447494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 972786 - 972891
Alignment:
| Q |
142 |
attcaccaatgcaggtggtcgaaaatcgcgaaacatttaccgggaagaaccgataatgagataaagaactactggaggacaaggatccaaaagcatatca |
241 |
Q |
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| T |
972786 |
attcaccattgcaggtggtccaaaattgcaaagcatcttccaggaagaactgacaatgagattaagaatttttggaggactaggatacaaaagcacatta |
972885 |
T |
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| Q |
242 |
agcaag |
247 |
Q |
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| T |
972886 |
agcaag |
972891 |
T |
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