View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_18 (Length: 372)
Name: NF7972_low_18
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 21592536 - 21592879
Alignment:
| Q |
18 |
ataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcc |
117 |
Q |
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| T |
21592536 |
ataccatgctcggtctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcc |
21592635 |
T |
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| Q |
118 |
tcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacg |
217 |
Q |
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| T |
21592636 |
tcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgtgtgaagagccagaagcccgtattggaaaaggagacg |
21592735 |
T |
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| Q |
218 |
gagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttcttccctttgaggagcatcttcccattcccatcggcg |
317 |
Q |
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| T |
21592736 |
gagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttcttccctttgaggagcatcttcccattcccatcggcg |
21592835 |
T |
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| Q |
318 |
attgtgcaagtcatatctgttaggctttctccttgaaccttcat |
361 |
Q |
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| T |
21592836 |
attgtgcaagtcatatctgttaggctttctccttgaaccttcat |
21592879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 42095474 - 42095371
Alignment:
| Q |
18 |
ataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcc |
117 |
Q |
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| T |
42095474 |
ataccatgctcggtctgcatcatattccatctcttgacgcatgctttcagtaatctcatacttgtgttcttcacccaagtcagatttatctgctatttcc |
42095375 |
T |
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| Q |
118 |
tcct |
121 |
Q |
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|||| |
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| T |
42095374 |
tcct |
42095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 42095259 - 42095134
Alignment:
| Q |
124 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaa |
223 |
Q |
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||||||||||| || ||||||||| | |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagatttgactgaagagccggaagctcgtattggaacaggagacggagaaa |
42095160 |
T |
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| Q |
224 |
catgatccaaaggagaaagtgaatta |
249 |
Q |
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|||| ||| |||||||| |||||||| |
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| T |
42095159 |
catggtcccaaggagaaggtgaatta |
42095134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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