View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7972_low_19 (Length: 361)

Name: NF7972_low_19
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7972_low_19
NF7972_low_19
[»] chr3 (23 HSPs)
chr3 (58-183)||(29555090-29555214)
chr3 (257-343)||(29554936-29555022)
chr3 (3-55)||(33118899-33118951)
chr3 (3-65)||(11095401-11095463)
chr3 (3-55)||(36707472-36707524)
chr3 (3-55)||(49607414-49607466)
chr3 (3-51)||(52629304-52629352)
chr3 (3-55)||(53982011-53982063)
chr3 (3-60)||(26141580-26141637)
chr3 (1-50)||(48587137-48587186)
chr3 (3-55)||(11347970-11348022)
chr3 (3-55)||(33644200-33644252)
chr3 (3-55)||(54868943-54868995)
chr3 (3-50)||(30801781-30801828)
chr3 (1-55)||(8956762-8956816)
chr3 (1-55)||(14623885-14623939)
chr3 (1-55)||(35536626-35536680)
chr3 (1-55)||(35965820-35965874)
chr3 (1-55)||(45058599-45058652)
chr3 (3-57)||(51419408-51419462)
chr3 (3-56)||(8076392-8076445)
chr3 (18-55)||(11907371-11907408)
chr3 (3-55)||(27714939-27714991)
[»] chr5 (19 HSPs)
chr5 (262-343)||(42779650-42779731)
chr5 (3-55)||(28177775-28177827)
chr5 (3-50)||(18520932-18520979)
chr5 (3-50)||(36875651-36875698)
chr5 (1-55)||(14831814-14831868)
chr5 (3-60)||(33149686-33149743)
chr5 (3-60)||(39688945-39689002)
chr5 (3-55)||(2740274-2740326)
chr5 (3-55)||(3921313-3921365)
chr5 (3-55)||(15409658-15409710)
chr5 (3-55)||(35785199-35785251)
chr5 (3-55)||(35943940-35943992)
chr5 (3-55)||(36732990-36733042)
chr5 (3-55)||(2252216-2252268)
chr5 (3-55)||(6679698-6679750)
chr5 (7-55)||(26720516-26720564)
chr5 (7-55)||(26990265-26990313)
chr5 (3-55)||(40145407-40145459)
chr5 (3-55)||(42414350-42414402)
[»] chr8 (21 HSPs)
chr8 (3-55)||(10284679-10284731)
chr8 (3-55)||(12831047-12831099)
chr8 (3-55)||(23122645-23122697)
chr8 (1-55)||(30479520-30479574)
chr8 (3-56)||(1179988-1180041)
chr8 (1-62)||(20074980-20075041)
chr8 (3-60)||(34012344-34012401)
chr8 (3-55)||(504169-504221)
chr8 (7-55)||(15048233-15048281)
chr8 (3-55)||(15197333-15197385)
chr8 (3-55)||(16383377-16383429)
chr8 (3-55)||(34307216-34307268)
chr8 (3-55)||(40423991-40424043)
chr8 (3-53)||(10621135-10621185)
chr8 (3-65)||(24307841-24307903)
chr8 (3-56)||(14055640-14055693)
chr8 (3-48)||(14547929-14547974)
chr8 (3-55)||(16056449-16056501)
chr8 (3-55)||(24307629-24307681)
chr8 (3-55)||(37038479-37038531)
chr8 (3-55)||(43414629-43414681)
[»] chr7 (21 HSPs)
chr7 (3-55)||(38267040-38267092)
chr7 (3-69)||(7389375-7389441)
chr7 (3-55)||(21234401-21234453)
chr7 (1-55)||(8080429-8080483)
chr7 (3-55)||(3434562-3434614)
chr7 (3-55)||(19436235-19436287)
chr7 (3-55)||(22343361-22343413)
chr7 (3-55)||(35137533-35137585)
chr7 (3-55)||(36361961-36362013)
chr7 (3-54)||(35522877-35522928)
chr7 (1-55)||(26296644-26296698)
chr7 (1-55)||(46033847-46033901)
chr7 (3-57)||(46374850-46374904)
chr7 (3-55)||(8238212-8238265)
chr7 (6-55)||(11044188-11044237)
chr7 (3-55)||(4999562-4999614)
chr7 (3-55)||(19329842-19329894)
chr7 (3-55)||(31735884-31735936)
chr7 (3-55)||(36362026-36362078)
chr7 (3-55)||(38044197-38044249)
chr7 (7-55)||(41915741-41915789)
[»] chr4 (15 HSPs)
chr4 (3-55)||(480495-480547)
chr4 (1-55)||(11511508-11511562)
chr4 (3-55)||(6034044-6034096)
chr4 (3-55)||(31910192-31910244)
chr4 (3-55)||(48183097-48183149)
chr4 (3-55)||(54473581-54473633)
chr4 (3-55)||(40574779-40574831)
chr4 (3-55)||(50052476-50052528)
chr4 (3-55)||(55475191-55475243)
chr4 (3-56)||(41236346-41236399)
chr4 (3-55)||(3481654-3481706)
chr4 (3-55)||(19670764-19670816)
chr4 (3-55)||(23608235-23608287)
chr4 (3-55)||(29239886-29239938)
chr4 (3-55)||(50526219-50526271)
[»] chr2 (20 HSPs)
chr2 (3-55)||(9058480-9058532)
chr2 (3-55)||(10249430-10249482)
chr2 (3-55)||(13438343-13438395)
chr2 (3-55)||(32505696-32505748)
chr2 (3-55)||(33436148-33436200)
chr2 (3-55)||(40613950-40614002)
chr2 (3-55)||(43490121-43490173)
chr2 (3-50)||(28863460-28863507)
chr2 (1-55)||(5574534-5574588)
chr2 (1-55)||(30915463-30915517)
chr2 (7-55)||(2533124-2533172)
chr2 (3-55)||(4060685-4060737)
chr2 (3-55)||(7465783-7465835)
chr2 (3-55)||(17473020-17473072)
chr2 (3-55)||(27864704-27864756)
chr2 (3-55)||(38732354-38732406)
chr2 (3-55)||(40701478-40701530)
chr2 (3-50)||(19930868-19930915)
chr2 (3-60)||(28381703-28381760)
chr2 (3-55)||(26891552-26891604)
[»] chr1 (13 HSPs)
chr1 (3-55)||(2581915-2581967)
chr1 (3-55)||(9474924-9474976)
chr1 (3-56)||(3000318-3000371)
chr1 (3-55)||(5959048-5959100)
chr1 (3-55)||(32813247-32813299)
chr1 (3-55)||(47452368-47452420)
chr1 (3-55)||(50591048-50591100)
chr1 (3-55)||(27564783-27564835)
chr1 (3-55)||(38595154-38595206)
chr1 (3-55)||(41758805-41758857)
chr1 (3-55)||(48716330-48716382)
chr1 (3-55)||(49811575-49811627)
chr1 (3-55)||(51898731-51898783)
[»] chr6 (8 HSPs)
chr6 (3-50)||(22880706-22880753)
chr6 (3-48)||(32869685-32869730)
chr6 (3-55)||(15508072-15508124)
chr6 (3-55)||(15990090-15990142)
chr6 (3-55)||(30341408-30341460)
chr6 (3-55)||(31110807-31110859)
chr6 (3-55)||(17598554-17598606)
chr6 (3-55)||(31976248-31976300)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-55)||(10155-10209)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 29555214 - 29555090
Alignment:
Q  58 aaattaataacacaacatattcataaattcaccaattcatggagacattcaaagttcaaacaaaatcactttgcaaagtcttcgaaatccatcttgcgat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  29555214 aaattaataacacaacatattcataaattcaccaattcatggagacattcaaagttcaaacaaaatcaccttgcaaagtctt-gaaatccatcttgcgat 29555116  T
Q  158 ccaaaatttcttttagcaccggaggc 183  Q
    ||||||||||||||||||||||||||    
T  29555115 ccaaaatttcttttagcaccggaggc 29555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 29555022 - 29554936
Alignment:
Q  257 cattctcaaaatcaacataactagatgccaggaacaagtacttcgtggccacacaaaaacaaaagacacaagacactcacatctcct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555022 cattctcaaaatcaacataactagatgccaggaacaagtacttcgtggccacacaaaaacaaaagacacaagacactcacatctcct 29554936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33118899 - 33118951
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  33118899 tgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 11095401 - 11095463
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaattaat 65  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| |||| ||| |||||    
T  11095401 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttaatttaat 11095463  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36707472 - 36707524
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  36707472 tgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 49607466 - 49607414
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  49607466 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 52629352 - 52629304
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcata 51  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||||    
T  52629352 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 53982063 - 53982011
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  53982063 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 26141580 - 26141637
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaa 60  Q
    ||||||||| ||||||||||||| ||| ||||| | ||||||||||||||||| ||||    
T  26141580 tgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcataaa 26141637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48587137 - 48587186
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||    
T  48587137 tatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 11347970 - 11348022
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||| ||||||||||| ||||| | |||||||||||||||||    
T  11347970 tgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 33644252 - 33644200
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| |||  |||||| |||||||||||| ||||    
T  33644252 tgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 54868943 - 54868995
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  54868943 tgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 30801781 - 30801828
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||||| |||||||||||||| |||| ||||||| ||||||||||||    
T  30801781 tgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8956816 - 8956762
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||| ||||||| ||| ||||| | |||||||||||| ||||    
T  8956816 tatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14623885 - 14623939
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||||| |||||||||| ||| ||||| | |||||||||||| ||||    
T  14623885 tatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35536680 - 35536626
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||| ||||||||| ||| ||||| | |||||||||||| ||||    
T  35536680 tatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35965820 - 35965874
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||| |||||| |||||||||| | | |||||||||| ||||    
T  35965820 tatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactc 35965874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45058599 - 45058652
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  45058599 tatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 51419408 - 51419462
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgt 57  Q
    ||||||||| ||||| ||||||||||  ||||| | |||||||||||||||||||    
T  51419408 tgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactcgt 51419462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 8076445 - 8076392
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcg 56  Q
    |||||||||||||||||||| || ||| ||||||| | |||||||||| |||||    
T  8076445 tgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactcg 8076392  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 11907408 - 11907371
Alignment:
Q  18 gtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  11907408 gtgtattgtcacctaagggtgtctatgtatcataactc 11907371  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 27714939 - 27714991
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||  ||| ||| ||| |||||||||||| ||||    
T  27714939 tgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 42779650 - 42779731
Alignment:
Q  262 tcaaaatcaacataactagatgccaggaacaagtacttcgtggccacacaaaaacaaaagacacaagacactcacatctcct 343  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42779650 tcaaaatcaacgtaactagatgctaggaacaagtacttcgtagccacacaaaaacaaaagacacaagacactcacatctcct 42779731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 28177827 - 28177775
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||||||||    
T  28177827 tgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 18520932 - 18520979
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  18520932 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 36875651 - 36875698
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  36875651 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14831868 - 14831814
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||| ||| |||| || |||||||||||| ||||    
T  14831868 tatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 33149686 - 33149743
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaa 60  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||||||| |||| ||||    
T  33149686 tgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaa 33149743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39688945 - 39689002
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaa 60  Q
    |||||||||||| || ||||||| ||||||||||| | ||||||||||||||| ||||    
T  39688945 tgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactcttaaa 39689002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2740326 - 2740274
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||| ||||    
T  2740326 tgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3921313 - 3921365
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  3921313 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15409658 - 15409710
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||  ||||||||||| ||||| | |||||||||||||||||    
T  15409658 tgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 35785251 - 35785199
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  35785251 tgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 35943940 - 35943992
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| | ||||||| ||| ||||||| |||||||||||||||||    
T  35943940 tgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36732990 - 36733042
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||||||||||||||  || ||||||| |||||||||||| ||||    
T  36732990 tgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 2252216 - 2252268
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||| | | |||||||||||||||    
T  2252216 tgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 6679750 - 6679698
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||| | | |||||||||||||||||    
T  6679750 tgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 26720564 - 26720516
Alignment:
Q  7 ggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||| ||| ||||| | |||||||||||||||||    
T  26720564 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 26990313 - 26990265
Alignment:
Q  7 ggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||| ||| ||||| | |||||||||||||||||    
T  26990313 ggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40145459 - 40145407
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||    
T  40145459 tgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 42414350 - 42414402
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||  ||| |||||||||||| ||||    
T  42414350 tgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 10284679 - 10284731
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10284679 tgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 12831099 - 12831047
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  12831099 tgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23122645 - 23122697
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||    
T  23122645 tgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30479520 - 30479574
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||| ||||||||||||||||| ||| ||||||| | |||||||||||||||    
T  30479520 tatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 1179988 - 1180041
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcg 56  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||||||| |||||    
T  1179988 tgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcg 1180041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20074980 - 20075041
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaatt 62  Q
    |||||||||||||||| |||||||| ||| ||||| | |||||||||||| |||| ||||||    
T  20074980 tatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactcataaatt 20075041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 34012344 - 34012401
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaa 60  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||||||| |||| ||||    
T  34012344 tgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaa 34012401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 504169 - 504221
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  504169 tgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 15048233 - 15048281
Alignment:
Q  7 ggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||| ||| ||||| | |||||||||||||||||    
T  15048233 ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15197385 - 15197333
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| |||| || |||||||||||| ||||    
T  15197385 tgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16383429 - 16383377
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  16383429 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 34307268 - 34307216
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  34307268 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40423991 - 40424043
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  40423991 tgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 10621135 - 10621185
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataac 53  Q
    ||||||||||||||||||||||  ||| ||||| | |||||||||||||||    
T  10621135 tgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 24307841 - 24307903
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaattaat 65  Q
    |||||||||||| || ||||||| ||| ||||||| | ||||||||||||||| |||| ||||    
T  24307841 tgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactcttaaaataat 24307903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 14055640 - 14055693
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcg 56  Q
    ||||| |||||| | |||||||||||| ||||||| || |||||||||||||||    
T  14055640 tgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactcg 14055693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 14547974 - 14547929
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatc 48  Q
    ||||||||||||| ||||||||| ||| ||||||| ||||||||||    
T  14547974 tgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatc 14547929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16056449 - 16056501
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| || ||||||||||| ||||| | | |||||||||||||||    
T  16056449 tgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 24307681 - 24307629
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| || ||||||| ||| ||||||| | |||||||||||||||    
T  24307681 tgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 37038531 - 37038479
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||| | | |||||||||||| ||||    
T  37038531 tgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 43414629 - 43414681
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||| ||| ||  ||||| | |||||||||||||||||    
T  43414629 tgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38267092 - 38267040
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  38267092 tgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 7389441 - 7389375
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaattaataaca 69  Q
    |||||||||||||| |||||||| ||| ||||||| |||||||||||| |||| |||| ||||||||    
T  7389441 tgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcttaaaataataaca 7389375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21234453 - 21234401
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||| |||||||||||||||||||||| ||||| | |||||||||||||||||    
T  21234453 tgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8080429 - 8080483
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  8080429 tatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3434614 - 3434562
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||| ||||    
T  3434614 tgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19436235 - 19436287
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||    
T  19436235 tgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22343413 - 22343361
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  22343413 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 35137585 - 35137533
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| |||||| ||||    
T  35137585 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36361961 - 36362013
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||| ||||||| ||| ||||||| |||||||||||| ||||    
T  36361961 tgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 35522928 - 35522877
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataact 54  Q
    ||||||||| ||| ||||||||| ||||||||| | ||||||||||||||||    
T  35522928 tgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26296698 - 26296644
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||| ||| ||||||| ||||||||| ||||| | |||||||||||||||||    
T  26296698 tatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46033847 - 46033901
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||| ||||||||||||| ||| ||||  | |||||||||||||||||    
T  46033847 tatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 46374850 - 46374904
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgt 57  Q
    ||||||||| ||||||||| ||| ||| ||||| | |||||||||||||||||||    
T  46374850 tgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactcgt 46374904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 8238265 - 8238212
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcactta-agggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| || ||||| | |||||||||||||||    
T  8238265 tgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 11044237 - 11044188
Alignment:
Q  6 gggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| ||||||| ||| ||||||| |||||||||||| ||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4999562 - 4999614
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||  ||||||| |||||||||||| ||||    
T  4999562 tgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19329894 - 19329842
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||||| | |||||||||||| ||||    
T  19329894 tgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31735936 - 31735884
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||| |||| |||||||| ||| ||||| | |||||||||||||||||    
T  31735936 tgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 36362078 - 36362026
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||| ||||||  ||| ||||||| |||||||||||| ||||    
T  36362078 tgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38044249 - 38044197
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| |||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  38044249 tgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 41915789 - 41915741
Alignment:
Q  7 ggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  41915789 ggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 480495 - 480547
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  480495 tgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 11511508 - 11511562
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  11511508 tatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 6034096 - 6034044
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  6034096 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31910244 - 31910192
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||||| |||||||||||| ||||| | |||||||||||||||||    
T  31910244 tgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 48183097 - 48183149
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  48183097 tgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 54473581 - 54473633
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||    
T  54473581 tgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40574831 - 40574779
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||  ||| ||||| | |||||||||||||||||    
T  40574831 tgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 50052476 - 50052528
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||| ||||    
T  50052476 tgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 55475243 - 55475191
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||| | | |||||||||||||||    
T  55475243 tgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 41236399 - 41236346
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcg 56  Q
    ||||| ||||||| ||||||||| ||| ||||||| |||||||||||| |||||    
T  41236399 tgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcg 41236346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3481706 - 3481654
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||||| |||||||| ||| ||| ||| |||||||||||| ||||    
T  3481706 tgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19670764 - 19670816
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||| ||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  19670764 tgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 23608287 - 23608235
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||||||  ||||||| ||||| |||||| ||||    
T  23608287 tgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29239938 - 29239886
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  29239938 tgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 50526219 - 50526271
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||| | | |||||||||||| ||||    
T  50526219 tgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9058532 - 9058480
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  9058532 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 10249430 - 10249482
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||    
T  10249430 tgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13438395 - 13438343
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||    
T  13438395 tgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 32505696 - 32505748
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||    
T  32505696 tgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33436148 - 33436200
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  33436148 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40613950 - 40614002
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||||||||    
T  40613950 tgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 43490173 - 43490121
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  43490173 tgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 28863507 - 28863460
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  28863507 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5574534 - 5574588
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||||| ||| |||| || |||||||||||| ||||    
T  5574534 tatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30915517 - 30915463
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||| |||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  30915517 tatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 2533172 - 2533124
Alignment:
Q  7 ggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||||||||    
T  2533172 ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4060737 - 4060685
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||||||||| ||||    
T  4060737 tgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7465783 - 7465835
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||  ||||||| |||||||||||| ||||    
T  7465783 tgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17473072 - 17473020
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||  ||||||| |||||||||||| ||||    
T  17473072 tgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 27864756 - 27864704
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  27864756 tgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38732406 - 38732354
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| || ||||||||||| ||||||| | |||||||||||||||    
T  38732406 tgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40701530 - 40701478
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  40701530 tgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 19930868 - 19930915
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||| ||||||||||||||||| ||| ||||||| ||||||||||||    
T  19930868 tgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28381703 - 28381760
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcgtaaa 60  Q
    |||||||||| || ||||||||| ||| ||||||| |||||||||||| |||| ||||    
T  28381703 tgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactcataaa 28381760  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26891552 - 26891604
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||| | |||||||||| ||| |||||||  ||||||||||||||||    
T  26891552 tgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2581967 - 2581915
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  2581967 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9474924 - 9474976
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||    
T  9474924 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 3000371 - 3000318
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactcg 56  Q
    ||||||||||||||||||||||| ||| ||||||| | |||||||||| |||||    
T  3000371 tgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactcg 3000318  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 5959048 - 5959100
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||  ||||||||| ||||||||||| | |||||||||||||||    
T  5959048 tgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactc 5959100  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32813299 - 32813247
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||| ||||||||||||| ||| ||||| | |||||||||||||||||    
T  32813299 tgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 47452368 - 47452420
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||||||| ||||    
T  47452368 tgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 50591048 - 50591100
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  50591048 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 27564783 - 27564835
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| ||||||||| ||| ||||| | |||||||||||| ||||    
T  27564783 tgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38595206 - 38595154
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||| ||| | |||||||||| ||||    
T  38595206 tgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 41758857 - 41758805
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||||||||||||| || |||| ||| |||||||||||| ||||    
T  41758857 tgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactc 41758805  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 48716330 - 48716382
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||| ||||||||| ||| ||||||| |||||||||||| ||||    
T  48716330 tgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 49811575 - 49811627
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||| ||||||| ||||||||||||| ||||| | ||||| |||||||||||    
T  49811575 tgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactc 49811627  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 51898731 - 51898783
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||||||||||||| ||| ||| | | |||||||||||| ||||    
T  51898731 tgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 51898783  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 22880706 - 22880753
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcat 50  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  22880706 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 32869730 - 32869685
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatc 48  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  32869730 tgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatc 32869685  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15508072 - 15508124
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  15508072 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15990090 - 15990142
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  15990090 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 30341408 - 30341460
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||||||||||| |||||||||| ||| ||||||| | |||||||||||||||    
T  30341408 tgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 31110807 - 31110859
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    |||| |||||||||||||||||| ||| ||||| | |||||||||||||||||    
T  31110807 tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17598606 - 17598554
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||    
T  17598606 tgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31976300 - 31976248
Alignment:
Q  3 tgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||||| ||||||| ||||| ||| ||||| | |||||||||||||||||    
T  31976300 tgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

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Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10155 - 10209
Alignment:
Q  1 tatgtgggtgtcaaagggtgtattgtcacttaagggtttctatgtatcataactc 55  Q
    ||||||| ||||||||| ||||||| ||| ||| ||| |||||||||||||||||    
T  10155 tatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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