View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7972_low_23 (Length: 303)

Name: NF7972_low_23
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7972_low_23
NF7972_low_23
[»] chr7 (5 HSPs)
chr7 (17-295)||(21654441-21654714)
chr7 (234-291)||(21672728-21672785)
chr7 (234-286)||(21776369-21776420)
chr7 (37-118)||(28816512-28816595)
chr7 (238-295)||(21648887-21648945)
[»] scaffold0017 (1 HSPs)
scaffold0017 (136-230)||(37041-37135)
[»] chr3 (4 HSPs)
chr3 (37-128)||(21763897-21763988)
chr3 (132-213)||(37189724-37189805)
chr3 (133-213)||(37194525-37194605)
chr3 (37-118)||(9396925-9397005)
[»] chr6 (4 HSPs)
chr6 (133-213)||(34821447-34821527)
chr6 (133-213)||(34826245-34826325)
chr6 (133-213)||(33457287-33457367)
chr6 (133-213)||(33462088-33462168)
[»] chr8 (3 HSPs)
chr8 (132-213)||(44055126-44055207)
chr8 (133-203)||(2994151-2994221)
chr8 (133-203)||(2998951-2999021)
[»] scaffold0061 (1 HSPs)
scaffold0061 (154-230)||(69853-69929)
[»] chr5 (1 HSPs)
chr5 (46-118)||(31587756-31587827)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 21654714 - 21654441
Alignment:
Q  17 atacctgaggataccaatgttgtcgtgaccacatctttctttattatatgttgagatgaatttttggtagagatattggatcatttgtgatctatgtatt 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21654714 atacctgaggataccaatgttgtcatgaccacatctttctttattatgtgttcagatgaatttttggtagagatattggatcatttgtgatctatatatt 21654615  T
Q  117 gctacctttttggtattattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttgcgc 216  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||    
T  21654614 gctaccttttttgtactattgaagaataacacaaaagatatggaaacacaaatgatcaaagataaggagaaggaacacactacac-----tgacttgcgc 21654520  T
Q  217 cacgagctaactgagtttttctaca--attttgcatgagaagtatatatgtgagtctagaatatataatcatttttcttct 295  Q
    ||| |||||||||| ||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  21654519 cacaagctaactgaatttttctacaatattttgcatgagaagtatata--tgagtctagaatatataatcatttttcttct 21654441  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 21672785 - 21672728
Alignment:
Q  234 tttctacaattttgcatgagaagtatatatgtgagtctagaatatataatcatttttc 291  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21672785 tttctataattttgcatgagaagtatatatgcgagtctagaatatataatcatttttc 21672728  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 21776420 - 21776369
Alignment:
Q  234 tttctacaattttgcatgagaagtatatatgtgagtctagaatatataatcat 286  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  21776420 tttctacaattttgcgtgagaagtatata-gtgagtctagaatatataatcat 21776369  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 28816512 - 28816595
Alignment:
Q  37 tgtcgtgaccacatctttctttattatatgttgagatgaatttttggtagaga---tattggatcatttgtgatctatgtattgc 118  Q
    |||| |||||||||||||||||||||| || |||| | |||||||| ||||||   |||||||||| ||||||||||||||||||    
T  28816512 tgtcatgaccacatctttctttattatgtgctgagtttaatttttgctagagatattattggatca-ttgtgatctatgtattgc 28816595  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 21648945 - 21648887
Alignment:
Q  238 tacaattttgcatgagaagtatatatgtgagtctagaat-atataatcatttttcttct 295  Q
    ||||||||| ||||||| |||||||||| |||||||||| ||| |||||||||||||||    
T  21648945 tacaattttccatgagaggtatatatgttagtctagaattatagaatcatttttcttct 21648887  T

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Target: scaffold0017 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 37135 - 37041
Alignment:
Q  136 tgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttgcgccacgagctaactga 230  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  37135 tgaagaataacacaaaagatttggaaacacaaatgatcaaagataaggaggaggaacacactacacactagtgacttgcaccacaagctaactga 37041  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 21763988 - 21763897
Alignment:
Q  37 tgtcgtgaccacatctttctttattatatgttgagatgaatttttggtagagatattggatcatttgtgatctatgtattgctacctttttg 128  Q
    |||| |||||||||||||||||| ||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  21763988 tgtcatgaccacatctttctttaatatgtgttgagataaatgtttgctagagatattggatcatttgtgatctatgcattgcaacctttttg 21763897  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 37189724 - 37189805
Alignment:
Q  132 ttattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  37189724 ttattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacactagtaacttg 37189805  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 37194525 - 37194605
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  37194525 tattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacactagtaacttg 37194605  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 9396925 - 9397005
Alignment:
Q  37 tgtcgtgaccacatctttctttattatatgttgagatgaatttttggtagagatattggatcatttgtgatctatgtattgc 118  Q
    |||| |||||||||||||||||| |||| |||||| | ||||||||  ||||||||||||||| ||||||| ||||||||||    
T  9396925 tgtcatgaccacatctttctttagtatacgttgagttaaatttttgccagagatattggatca-ttgtgatatatgtattgc 9397005  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 34821447 - 34821527
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  34821447 tattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacactagtaacttg 34821527  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 34826245 - 34826325
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  34826245 tattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacactagtaacttg 34826325  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 33457287 - 33457367
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| |||||||| |||| |||||    
T  33457287 tattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacaatagtaacttg 33457367  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 33462088 - 33462168
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    ||||||||||||||||| |  |||||||| |||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  33462088 tattgaagaataacacagatcatatggaatcacaaatgatcaaagataaagagaaggaacatactacacactagtaacttg 33462168  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 44055207 - 44055126
Alignment:
Q  132 ttattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttg 213  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||| |||||    
T  44055207 ttattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaagaacatactacacactagtaacttg 44055126  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 2994151 - 2994221
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacac 203  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  2994151 tattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacac 2994221  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 2998951 - 2999021
Alignment:
Q  133 tattgaagaataacacaaaagatatggaaacacaaatgatcaaaaataaggagaaggaacacactacacac 203  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  2998951 tattgaagaataacacagatcatatggaaacacaaatgatcaaagataaagagaaggaacatactacacac 2999021  T

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Target: scaffold0061 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 69929 - 69853
Alignment:
Q  154 atatggaaacacaaatgatcaaaaataaggagaaggaacacactacacactagtgacttgcgccacgagctaactga 230  Q
    |||||||||||||||| |||||| |||||||| ||||| ||| ||||||| |||||||||| |||| ||||||||||    
T  69929 atatggaaacacaaataatcaaatataaggaggaggaatacattacacaccagtgacttgcaccacaagctaactga 69853  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 31587756 - 31587827
Alignment:
Q  46 cacatctttctttattatatgttgagatgaatttttggtagagatattggatcatttgtgatctatgtattgc 118  Q
    |||||||||||||||||| | || |||| |||||||| |||||||||||||||| ||||||||||| ||||||    
T  31587756 cacatctttctttattatgtattaagataaatttttgctagagatattggatca-ttgtgatctatatattgc 31587827  T

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