View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_24 (Length: 259)
Name: NF7972_low_24
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 23696908 - 23697139
Alignment:
| Q |
12 |
tatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
111 |
Q |
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| T |
23696908 |
tatggtgttagattcacaaaaattgtactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
23697007 |
T |
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| Q |
112 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggagga |
211 |
Q |
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| T |
23697008 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagatggcgagcgagggagga |
23697107 |
T |
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| Q |
212 |
aagatctaatggccatggaacttgctaagaac |
243 |
Q |
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| T |
23697108 |
aagatctaatggccatggaacttgctaagaac |
23697139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 23701024 - 23700793
Alignment:
| Q |
12 |
tatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
111 |
Q |
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| T |
23701024 |
tatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtcca |
23700925 |
T |
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| Q |
112 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggagga |
211 |
Q |
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| T |
23700924 |
cattgtcatagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggcgagcgagggatgg |
23700825 |
T |
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| Q |
212 |
aagatctaatggccatggaacttgctaagaac |
243 |
Q |
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| T |
23700824 |
aagatctaatggccatggaacttgcaaagaac |
23700793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 23694777 - 23695008
Alignment:
| Q |
12 |
tatggtgttagattcacaaaaattttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcct |
111 |
Q |
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||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| | |||| || | ||| || ||||| |
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| T |
23694777 |
tatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtcca |
23694876 |
T |
|
| Q |
112 |
cattgtaatagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagacggcgagcgagggagga |
211 |
Q |
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| T |
23694877 |
cattgtcatagattgttctgtgcacaatgtaaggtttcatggcacataggtgttgattgtaaagagtttctaagcttgaaagatggtgagcgagggaggg |
23694976 |
T |
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| Q |
212 |
aagatctaatggccatggaacttgctaagaac |
243 |
Q |
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| T |
23694977 |
aagatctaatggccatggaacttgctaagaac |
23695008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 8149144 - 8148995
Alignment:
| Q |
35 |
tttactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgc |
134 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||| | | |||||||| | || | || ||||| |||||| ||||| |||| || || |
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| T |
8149144 |
tttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaatgtccacattgtcatagactattctgcgc |
8149045 |
T |
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| Q |
135 |
acaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaa |
184 |
Q |
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||||||| | ||| |||||||| | | || ||||||||||||||||||| |
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| T |
8149044 |
acaatgtcaagttccatggcacacggaagtcgattgtagagagtttcaaa |
8148995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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