View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_25 (Length: 256)
Name: NF7972_low_25
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 1382254 - 1382409
Alignment:
| Q |
86 |
tctacatctacataggcaacacttggcaaacaggcaaaatggaactagatgtt-ctagtctactacttttaatacacaccaaacatcaaacaaaacttct |
184 |
Q |
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| T |
1382254 |
tctacatctacataggtaacacttggcaaacaggcaaaatggaactagatgttactagtctacaacttttaatacacaccaaacataaaataaaacttct |
1382353 |
T |
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| Q |
185 |
aatttgtcctcttctaacagtaagatattcaacattttctggacaagggagaagag |
240 |
Q |
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| T |
1382354 |
aatttgtcctcttctaacagtaagatattcaacattttctggacaagggagaagag |
1382409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 7316962 - 7317053
Alignment:
| Q |
148 |
tacttttaatacacaccaaacatcaaacaaaacttctaatttgtcctcttctaacagtaagatattcaacattttctggacaagggagaaga |
239 |
Q |
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| T |
7316962 |
tacttttaatacacaccaaacatcaaacaaaacttctaatttgtcctgttctaacagtaagatattcaacattttctggacaagggagaaga |
7317053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7316858 - 7316927
Alignment:
| Q |
1 |
tatgtctccggtctagtactaagcaaggagcagatatatgctaattatgccaacttatgatatttctaca |
70 |
Q |
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| T |
7316858 |
tatgtctccggtctagtacaaagcaagcagtagatatattctaattatgccaacttataatatttctaca |
7316927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 29378877 - 29378973
Alignment:
| Q |
35 |
tatatgctaattatgccaacttatgatatttctacatctaaatgggcaacatctacatctacataggcaacacttggcaaacaggcaaaatggaact |
131 |
Q |
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| T |
29378877 |
tatattctaattatgccaacttatgagaatttcacatctacatgggtaacatctacatctacataggtaacacttggaacagaggcaaactggaact |
29378973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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