View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_26 (Length: 252)
Name: NF7972_low_26
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 55 - 244
Target Start/End: Complemental strand, 1382225 - 1382037
Alignment:
| Q |
55 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagtgacagcacttttattaaggaaatgtttctattgaatacttctaacaaat |
154 |
Q |
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| T |
1382225 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagagacagcacttttattaaggaaatgtttatatttaacgcttctaacaaat |
1382126 |
T |
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| Q |
155 |
tggctatatttgatgttaaaacaagtaaattannnnnnnncccattagttttgggttttgtgaataagaagaaactattatatattattc |
244 |
Q |
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| T |
1382125 |
tggctttatttgatgttaaaacaagtaaattaattttttt-tcattagttttgggttttgtgaataagaagaaactattatatattattc |
1382037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 7315685 - 7315556
Alignment:
| Q |
115 |
tttattaaggaaatgtttctattgaatacttctaacaaattggctatatttgatgttaaaacaagtaaattannnnnnnncccattagttttgggttttg |
214 |
Q |
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| T |
7315685 |
tttattaaggaaatgtttgtgttgaacgcttctaacaaattggctatatttggtgttaaaacaagtaaattaatttttttttcattagttttgggttttg |
7315586 |
T |
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| Q |
215 |
tgaataagaagaaactattatatattattc |
244 |
Q |
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| T |
7315585 |
tgaataagaagaaactattatatattattc |
7315556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 7316876 - 7316787
Alignment:
| Q |
5 |
gtactagaccggagacatacaataatacaaacatggatacatggcacaaatacagtagatttagcaaagtagaagtattttatttagttt |
94 |
Q |
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| T |
7316876 |
gtactagaccggagacatacaataatacaatcaaggatacatggcacaaatacagtagagttagcaaagtagaagtattttatttagttt |
7316787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 29378850 - 29378772
Alignment:
| Q |
16 |
gagacatacaataatacaaacatggatacatggcacaaatacagtagatttagcaaagtagaagtattttatttagttt |
94 |
Q |
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|||| |||||||||||||| | ||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
29378850 |
gagatatacaataatacaatcgaggatacatgacacaaatacaatagatttagaaaagtagaagttttttatttagttt |
29378772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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