View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_27 (Length: 247)
Name: NF7972_low_27
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 31077932 - 31078040
Alignment:
| Q |
122 |
caactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgg |
221 |
Q |
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| T |
31077932 |
caactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgg |
31078031 |
T |
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| Q |
222 |
gaaagatac |
230 |
Q |
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| T |
31078032 |
gaaagatac |
31078040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 31077819 - 31077904
Alignment:
| Q |
9 |
gaagaatatattaaacatagggatcgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
94 |
Q |
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| T |
31077819 |
gaagaaaatattaaacatagggatcgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
31077904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 31131963 - 31132066
Alignment:
| Q |
127 |
ttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgggaaag |
226 |
Q |
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| T |
31131963 |
ttggaatcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattcttgctgggagag |
31132062 |
T |
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| Q |
227 |
atac |
230 |
Q |
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|||| |
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| T |
31132063 |
atac |
31132066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 31127255 - 31127358
Alignment:
| Q |
127 |
ttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgggaaag |
226 |
Q |
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| T |
31127255 |
ttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagag |
31127354 |
T |
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| Q |
227 |
atac |
230 |
Q |
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|||| |
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| T |
31127355 |
atac |
31127358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 31128854 - 31128902
Alignment:
| Q |
46 |
aaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
94 |
Q |
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| T |
31128854 |
aaagaagccgtcgttgaagtaagaggactcgccacaagaatcgttaggg |
31128902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 31127162 - 31127222
Alignment:
| Q |
34 |
gagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
94 |
Q |
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|||||||| || |||||||| | ||||||||||||||||| || |||||||||||||||| |
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| T |
31127162 |
gagcgacggttaaaagaagctgctgctgaagtaagaggactcgccacaagaatcgttaggg |
31127222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 31131869 - 31131930
Alignment:
| Q |
33 |
cgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
94 |
Q |
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| T |
31131869 |
cgagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccacaaaaattgttaggg |
31131930 |
T |
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