View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7972_low_3 (Length: 652)

Name: NF7972_low_3
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7972_low_3
NF7972_low_3
[»] chr4 (16 HSPs)
chr4 (13-315)||(34344604-34344907)
chr4 (365-636)||(34342555-34342816)
chr4 (278-315)||(19997354-19997391)
chr4 (278-315)||(34969383-34969420)
chr4 (329-365)||(34344553-34344589)
chr4 (280-315)||(20525567-20525602)
chr4 (278-315)||(836225-836262)
chr4 (278-315)||(11085755-11085792)
chr4 (278-315)||(11949753-11949790)
chr4 (278-315)||(21114295-21114332)
chr4 (278-315)||(34042274-34042311)
chr4 (278-315)||(40160886-40160923)
chr4 (278-315)||(42845059-42845096)
chr4 (278-314)||(19479468-19479504)
chr4 (278-314)||(32268115-32268151)
chr4 (278-314)||(41520988-41521024)
[»] chr2 (11 HSPs)
chr2 (278-315)||(18290686-18290723)
chr2 (278-315)||(4238793-4238830)
chr2 (278-315)||(5168569-5168606)
chr2 (278-315)||(9547399-9547436)
chr2 (278-315)||(24581007-24581044)
chr2 (278-315)||(29896284-29896321)
chr2 (278-315)||(31815877-31815914)
chr2 (278-315)||(35456810-35456847)
chr2 (278-315)||(36264469-36264506)
chr2 (278-310)||(19159975-19160007)
chr2 (282-314)||(40994768-40994800)
[»] chr5 (9 HSPs)
chr5 (278-314)||(27903147-27903183)
chr5 (278-315)||(35493963-35494000)
chr5 (278-312)||(2839832-2839866)
chr5 (278-315)||(13864378-13864415)
chr5 (278-315)||(20125060-20125096)
chr5 (286-315)||(37054259-37054288)
chr5 (278-315)||(37791153-37791190)
chr5 (280-312)||(21354310-21354342)
chr5 (278-314)||(39963527-39963563)
[»] chr8 (12 HSPs)
chr8 (278-315)||(33996103-33996140)
chr8 (278-315)||(37141391-37141428)
chr8 (280-315)||(39138988-39139023)
chr8 (278-315)||(8043904-8043941)
chr8 (278-315)||(12061621-12061658)
chr8 (278-315)||(12800890-12800927)
chr8 (278-315)||(35700385-35700422)
chr8 (278-314)||(12714362-12714397)
chr8 (280-308)||(22504287-22504315)
chr8 (278-314)||(23159475-23159511)
chr8 (278-314)||(26196595-26196631)
chr8 (278-314)||(27718885-27718921)
[»] chr7 (10 HSPs)
chr7 (278-315)||(21327531-21327568)
chr7 (280-315)||(6023345-6023380)
chr7 (278-315)||(145552-145589)
chr7 (278-315)||(18023713-18023750)
chr7 (278-315)||(24483888-24483925)
chr7 (278-311)||(29726834-29726867)
chr7 (278-315)||(42227795-42227832)
chr7 (278-315)||(45046205-45046242)
chr7 (278-315)||(46371015-46371052)
chr7 (278-314)||(26529682-26529718)
[»] chr6 (13 HSPs)
chr6 (278-315)||(29680622-29680659)
chr6 (278-312)||(26356074-26356108)
chr6 (278-315)||(788900-788937)
chr6 (278-315)||(2546214-2546251)
chr6 (278-315)||(8629686-8629723)
chr6 (278-315)||(10018433-10018470)
chr6 (278-315)||(15169965-15170002)
chr6 (278-315)||(15178737-15178774)
chr6 (278-315)||(21029356-21029393)
chr6 (278-315)||(24623307-24623344)
chr6 (278-314)||(23903298-23903334)
chr6 (278-314)||(32053822-32053858)
chr6 (276-312)||(34481407-34481443)
[»] chr3 (10 HSPs)
chr3 (278-315)||(48022304-48022341)
chr3 (280-315)||(42276388-42276423)
chr3 (278-308)||(26941734-26941764)
chr3 (364-422)||(37318543-37318601)
chr3 (278-315)||(17755155-17755192)
chr3 (278-315)||(19056475-19056512)
chr3 (278-315)||(45334223-45334260)
chr3 (278-314)||(34899131-34899167)
chr3 (278-314)||(39779058-39779094)
chr3 (280-312)||(52337339-52337371)
[»] chr1 (13 HSPs)
chr1 (278-315)||(17669679-17669716)
chr1 (278-315)||(27533277-27533314)
chr1 (281-315)||(1091216-1091250)
chr1 (278-315)||(8269358-8269395)
chr1 (278-315)||(16966962-16966999)
chr1 (278-315)||(16967184-16967221)
chr1 (278-315)||(24571615-24571652)
chr1 (278-315)||(34899616-34899653)
chr1 (278-315)||(39252136-39252173)
chr1 (278-315)||(48681923-48681960)
chr1 (275-315)||(6423751-6423791)
chr1 (278-314)||(18186711-18186747)
chr1 (280-312)||(23203358-23203390)
[»] scaffold0021 (1 HSPs)
scaffold0021 (280-315)||(161177-161212)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 34344907 - 34344604
Alignment:
Q  13 aagaagaaaggagaggatgctgtggagatgattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatg 112  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34344907 aagaagaaaggagaggatgctgtggagagaattcgagcacaattaggccttgttgcacctcatcatcatgttcactttctagtccttgatgtctcagatg 34344808  T
Q  113 ctgattctattcaaacctttgcatcctccttcaaagacaaatttggagccaccttggatattctcgtatgtattaattacctattacttgttcaatttta 212  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34344807 ctgattctattaaaacctttgcatcctccttcaaagacaaatttggagccaccttggatattctcgtatgtattaattacctattatttgttcaatttta 34344708  T
Q  213 atttttacatcatttggattgattttattc-tgtctctccacctctaggaataaatgtgtcattttatatatgcaaggttcggggttcaaactccgacca 311  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  34344707 atttttacatcatttggattgattttattcttgtctctccacctctaggaataaatgtgtcattttatatatgcaaagttcggggttcaaactccaacca 34344608  T
Q  312 ccac 315  Q
    ||||    
T  34344607 ccac 34344604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 365 - 636
Target Start/End: Complemental strand, 34342816 - 34342555
Alignment:
Q  365 taatatacgcattggtcgaagtttgaacttcaaacaactcaattattcgctttaaaaaggatgaattagtaaacactaggctatgtgacaaaaaat---- 460  Q
    ||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| || ||||||| |||||||||||         
T  34342816 taatatacgcattggtcggggtttaaacttcaaacacctcaattattcgctttaaaaagggtgaattactaaccaataggctacgtgacaaaaaaaaaaa 34342717  T
Q  461 --gttaatactctaatttacataatattctataacaatattatccattgcgttaaacaaaattataagatacaataagatataaatacacactttagacc 558  Q
      ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||        
T  34342716 tagttaatactctaatttacataatattctataacaatattattcattgtcttaaacaaaattataagatacaataagatataaatacacacttta---- 34342621  T
Q  559 cagacaattttttgaccaaagacctagacaagacatgga-ctagttgtaattttttattgacataaatatgttttttgt 636  Q
                 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34342620 -------------gaccaaagacctagactagacatggacctagttgtaattttttattgacataaatatgttttttgt 34342555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 19997391 - 19997354
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19997391 atatatgcaaagttcggggttcaaactccgaccaccac 19997354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 34969420 - 34969383
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34969420 atatatgcaaggttcagggttcaaactccgaccaccac 34969383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 34344589 - 34344553
Alignment:
Q  329 taattttatgttcattcaattgataaggacaaggtat 365  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34344589 taattttatgttcattcaattgataaggacaatgtat 34344553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 20525602 - 20525567
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20525602 atatgcaagattcggggttcaaactccgaccaccac 20525567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 836262 - 836225
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| || |||||||||||||||||||||    
T  836262 atatatgcaaggtccgaggttcaaactccgaccaccac 836225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 11085792 - 11085755
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||| | |||||||||||||||||||    
T  11085792 atatatgcaaggttcgagattcaaactccgaccaccac 11085755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 11949790 - 11949753
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  11949790 atatatgcaaggtccggggttcaaaccccgaccaccac 11949753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 21114332 - 21114295
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  21114332 atatatgcaaggtccggggttcaaaccccgaccaccac 21114295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 34042274 - 34042311
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  34042274 atatatgcaaggttcggggttcaaacctcgaccaccac 34042311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 40160886 - 40160923
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||| || ||||||||||||||||||||    
T  40160886 atatatgcaaggtttggagttcaaactccgaccaccac 40160923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 42845059 - 42845096
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  42845059 atatatgcaaggtccggggttaaaactccgaccaccac 42845096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 19479504 - 19479468
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  19479504 atatatgcaaggtccggggttcaaaccccgaccacca 19479468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 32268115 - 32268151
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  32268115 atatatgaaaggtttggggttcaaactccgaccacca 32268151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 41520988 - 41521024
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41520988 atatatgcaaggttcaaggttcaaactccgaccacca 41521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 18290686 - 18290723
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18290686 atatatgcaaggttcggggttcaaactccgaccaccac 18290723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 4238793 - 4238830
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  4238793 atatatgtaaggttcggggttcgaactccgaccaccac 4238830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 5168606 - 5168569
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  5168606 atatatgcaaggttcggggttcaaaccccgactaccac 5168569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 9547436 - 9547399
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  9547436 atatatgcaaggtttggggttcaaaccccgaccaccac 9547399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 24581044 - 24581007
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  24581044 atatatgcaaggttcgaggttcaaaccccgaccaccac 24581007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 29896321 - 29896284
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  29896321 atatatgcaaggtttggggttcaaaccccgaccaccac 29896284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 31815914 - 31815877
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  31815914 atatatgcaaggtccggggttcaaaccccgaccaccac 31815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 35456847 - 35456810
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||||| || ||||||||    
T  35456847 atatatgcaaggttcggggttcaaaccccaaccaccac 35456810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 36264506 - 36264469
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  36264506 atatatgcaaagttcggggttcaaaccccgaccaccac 36264469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 19159975 - 19160007
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgacc 310  Q
    ||||||||||||||||| |||||||||||||||    
T  19159975 atatatgcaaggttcggagttcaaactccgacc 19160007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 40994800 - 40994768
Alignment:
Q  282 atgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||||||||| ||||||||||    
T  40994800 atgcaaggttcggggttcaaacaccgaccacca 40994768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 27903147 - 27903183
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||||||||||||||||||||||||    
T  27903147 atatatgcaaggttcggggttcaaactccgaccacca 27903183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 35494000 - 35493963
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||| |||||||||||||||||||    
T  35494000 atatatgcaaggttcgggattcaaactccgaccaccac 35493963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 2839832 - 2839866
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccac 312  Q
    |||||| ||||||||||||||||||||||||||||    
T  2839832 atatatccaaggttcggggttcaaactccgaccac 2839866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 13864378 - 13864415
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  13864378 atatatgcaaggtccggggttcaaaccccgaccaccac 13864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 20125060 - 20125096
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||| |||||||||||||||||||    
T  20125060 atatatgcaaggttcggg-ttcaaactccgaccaccac 20125096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 37054288 - 37054259
Alignment:
Q  286 aaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||||||||    
T  37054288 aaggttcggggttcaaactccgaccaccac 37054259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 37791190 - 37791153
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  37791190 atatatgcaaggttcgaggttcaaactccggccaccac 37791153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 21354342 - 21354310
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccac 312  Q
    ||||||||||||||| |||||||||||||||||    
T  21354342 atatgcaaggttcggagttcaaactccgaccac 21354310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 39963527 - 39963563
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  39963527 atatatgtaaggttcggggttcaaactctgaccacca 39963563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 33996103 - 33996140
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33996103 atatatgcaaagttcggggttcaaactccgaccaccac 33996140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 37141391 - 37141428
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||||||||| |||||||    
T  37141391 atatatgcaaggttcggggttcaaactccggccaccac 37141428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 39139023 - 39138988
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39139023 atatgtaaggttcggggttcaaactccgaccaccac 39138988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 8043904 - 8043941
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  8043904 atatatgcaaggttcggagttcaaactccaaccaccac 8043941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 12061621 - 12061658
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  12061621 atatatgcaaggttcagggttcaaagtccgaccaccac 12061658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 12800927 - 12800890
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12800927 atatatgcaaggtccggggttcaaaccccgaccaccac 12800890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 35700422 - 35700385
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  35700422 atatatgcaaaattcggggttcaaactccgaccaccac 35700385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 12714397 - 12714362
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12714397 atatatgcaaggttcggggttcaaa-tccgaccacca 12714362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 22504315 - 22504287
Alignment:
Q  280 atatgcaaggttcggggttcaaactccga 308  Q
    |||||||||||||||||||||||||||||    
T  22504315 atatgcaaggttcggggttcaaactccga 22504287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 23159475 - 23159511
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  23159475 atatatgcaagattcggggttcaaaccccgaccacca 23159511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 26196631 - 26196595
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  26196631 atatatgcaaggttcgtggttcaaactccggccacca 26196595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 27718921 - 27718885
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  27718921 atatatgcaaggtccggagttcaaactccgaccacca 27718885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 21327568 - 21327531
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||| |||||||||||||||||||||||    
T  21327568 atatatgcaaggtttggggttcaaactccgaccaccac 21327531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 6023345 - 6023380
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||| |||||||||||    
T  6023345 atatgcaaggttcggggttcaaaccccgaccaccac 6023380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 145552 - 145589
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  145552 atatatgcaaggtccggggttcaaaccccgaccaccac 145589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 18023713 - 18023750
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  18023713 atatatgcaaggtccagggttcaaactccgaccaccac 18023750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 24483925 - 24483888
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  24483925 atatatgcaaagttcggggttcaaactccaaccaccac 24483888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 29726834 - 29726867
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgacca 311  Q
    |||||||||||||||||||||||||| |||||||    
T  29726834 atatatgcaaggttcggggttcaaaccccgacca 29726867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 42227832 - 42227795
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  42227832 atatatgtaaggttcgaggttcaaactccgaccaccac 42227795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 45046242 - 45046205
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  45046242 atatatgcaaggtccggggttcaaactctgaccaccac 45046205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 46371015 - 46371052
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  46371015 atatatccaaggtccggggttcaaactccgaccaccac 46371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 26529718 - 26529682
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  26529718 atatatgcaaggttcggggtttaaaccccgaccacca 26529682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 29680622 - 29680659
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29680622 atatatgcaaggttcggtgttcaaactccgaccaccac 29680659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 26356108 - 26356074
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccac 312  Q
    |||||||||||||||||||||||||||||| ||||    
T  26356108 atatatgcaaggttcggggttcaaactccggccac 26356074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 788900 - 788937
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  788900 atatatgcaaggttcggagttcaaaccccgaccaccac 788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 2546214 - 2546251
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  2546214 atatatgcaaggtacggggttcaaaccccgaccaccac 2546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 8629723 - 8629686
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  8629723 atatatgcaaggttcggggttcaaacctcgaccaccac 8629686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 10018433 - 10018470
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  10018433 atatatgtaaggttcggggttcaaactccggccaccac 10018470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 15169965 - 15170002
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  15169965 atatatgtaaggttcggggttcaaaccccgaccaccac 15170002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 15178737 - 15178774
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  15178737 atatatgtaaggttcggggttcaaaccccgaccaccac 15178774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 21029393 - 21029356
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||| || |||||||||    
T  21029393 atatatgcaaggttcggggttcaaattctgaccaccac 21029356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 24623344 - 24623307
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  24623344 atatatgtaaggttcggggttcaaaccccgaccaccac 24623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 23903334 - 23903298
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  23903334 atatatgcaacgttcggggttcaaacaccgaccacca 23903298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 32053822 - 32053858
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  32053822 atatatgcaaggttcgtggttcaaactccggccacca 32053858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 34481443 - 34481407
Alignment:
Q  276 ttatatatgcaaggttcggggttcaaactccgaccac 312  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  34481443 ttatatatgcaaggtccggggttcaaaccccgaccac 34481407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 48022341 - 48022304
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||| |||||||||||||||||||||||||||    
T  48022341 atatatgcaaagttcggggttcaaactccgaccaccac 48022304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 42276423 - 42276388
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||||||| ||||||    
T  42276423 atatgcaaggttcggggttcaaactccgaacaccac 42276388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 308
Target Start/End: Original strand, 26941734 - 26941764
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccga 308  Q
    |||||||||||||||||||||||||||||||    
T  26941734 atatatgcaaggttcggggttcaaactccga 26941764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 37318601 - 37318543
Alignment:
Q  364 ataatatacgcattggtcgaagtttgaacttcaaacaactcaattattcgctttaaaaa 422  Q
    |||||||| |||  ||||||||||||||||||  |||||||| |||||| |||||||||    
T  37318601 ataatatatgcagaggtcgaagtttgaacttcggacaactcacttattcactttaaaaa 37318543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 17755155 - 17755192
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  17755155 atatatgtaaggttcggggttcaaattccgaccaccac 17755192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 19056475 - 19056512
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  19056475 atatatgtaaggttcggggttcaaattccgaccaccac 19056512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 45334223 - 45334260
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||||  |||||||||||    
T  45334223 atatatgcaaggttcggggttcaaatcccgaccaccac 45334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 34899131 - 34899167
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  34899131 atatatgcaaggtccggggttcaaaccccgaccacca 34899167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 39779058 - 39779094
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||||||||||||| || |||||||    
T  39779058 atatatgcaaggttcggggttcaaaccccaaccacca 39779094  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 52337371 - 52337339
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccac 312  Q
    |||||||||||||||| ||||||||||||||||    
T  52337371 atatgcaaggttcgggtttcaaactccgaccac 52337339  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 17669679 - 17669716
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17669679 atatatgcaaggttcggggttcaaactccggccaccac 17669716  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 27533277 - 27533314
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27533277 atatatgcaaggttcggggttcaaaccccgaccaccac 27533314  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 1091216 - 1091250
Alignment:
Q  281 tatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||||||||||| |||||||||    
T  1091216 tatgcaaggttcggggttcaaactctgaccaccac 1091250  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 8269395 - 8269358
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  8269395 atatatgcaaggtccggggttcaaaccccgaccaccac 8269358  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 16966999 - 16966962
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  16966999 atatatgcaaggttcgaggttcaaactccggccaccac 16966962  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 16967221 - 16967184
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  16967221 atatatgcaaggttcgaggttcaaactccggccaccac 16967184  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 24571652 - 24571615
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||  |||||||||||||||||||||||    
T  24571652 atatatgcaaggtctggggttcaaactccgaccaccac 24571615  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 34899653 - 34899616
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  34899653 atatatgcaaagtttggggttcaaactccgaccaccac 34899616  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 39252173 - 39252136
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  39252173 atatatgcaaggtccggggttcaaactccaaccaccac 39252136  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 48681960 - 48681923
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  48681960 atatatgcaaggttcggagctcaaactccgaccaccac 48681923  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 6423791 - 6423751
Alignment:
Q  275 tttatatatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||| |||||||||||| ||| |||||||    
T  6423791 tttatatatgcaaggtccggggttcaaaccccggccaccac 6423751  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 18186711 - 18186747
Alignment:
Q  278 atatatgcaaggttcggggttcaaactccgaccacca 314  Q
    |||||||||||||||||||||||||| || |||||||    
T  18186711 atatatgcaaggttcggggttcaaaccccaaccacca 18186747  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 23203358 - 23203390
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccac 312  Q
    |||||||||||||||||||||||| ||||||||    
T  23203358 atatgcaaggttcggggttcaaaccccgaccac 23203390  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 161177 - 161212
Alignment:
Q  280 atatgcaaggttcggggttcaaactccgaccaccac 315  Q
    |||||||||||||||||||||||| |||||||||||    
T  161177 atatgcaaggttcggggttcaaaccccgaccaccac 161212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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